Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq123480 161 1e-34 seq123465 111 2e-19 >seq123480 Length=9600728 Score = 161 bits (178), Expect = 1e-34 Identities = 178/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785 |||||| | | || || ||||||||||| || |||||||| || || || ||||| || Sbjct 4247708 GATTAGCCTGCTTGTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTAAG 4247649 Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845 ||||| || || ||||||||||| | |||||| |||||||| |||||||| | ||| || Sbjct 4247648 CACATCACACACTCTGTTGTGTTCCCGCAGCCAAATGGTGGCATACATCATCAGACCAGG 4247589 Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGC 9905 ||| | |||||| ||||| | ||||| ||||| || | || || || | |||| Sbjct 4247588 CACCAGACCAAAGACTTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAACATGAGGCGG 4247529 Query 9906 ATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 || | ||| | ||||| || |||||||| ||||| |||||||| || || | ||| Sbjct 4247528 GTAGATCATTTCGACCTGCGTATCTTTGACTGTGGGAGGATACATCTCTCCATTAAT 4247472 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 ||| |||||||| | ||| | |||||||| |||||||| | | ||| ||| | || Sbjct 4246680 TCTCACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 4246621 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 |||||| || || ||||| || | || || || |||||||| || |||||||||||||| Sbjct 4246620 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCAGATTTGTGCCCTGGGGATC 4246561 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 || || || | || | | || ||||| | ||||| | | ||||||| || || Sbjct 4246560 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAACTTCTTTTGAATCAGGAAG 4246504 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | || || ||||||||| ||| || ||||| |||| ||| ||| Sbjct 4245848 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGGCACAGGAGGAAGAGCTCTGGTA 4245789 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 ||||| || || || ||||| ||||||||||| || |||| || | | || || Sbjct 4245788 TAATAAGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCTGTAGTGCACATTATAAGTT 4245729 Query 10507 GGGGGACTGTCAATCA 10522 || ||||| ||||||| Sbjct 4245728 GGCGGACTCTCAATCA 4245713 Score = 89.7 bits (98), Expect = 7e-13 Identities = 127/177 (72%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 9545 GAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTC 9604 |||| | ||||||| || | ||||||| ||||||| || || ||||| || || || | Sbjct 4248173 GAAAGACGTCAGGCAGAAGGGGATGCCAGTGGTAGAGCGTGTTAAACTCAGCAGCAATAC 4248114 Query 9605 GGTTCTGGTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAA 9662 ||||||||||||| || | ||| ||| || | ||| |||||||| | || | ||| Sbjct 4248113 GGTTCTGGTACTGGAACTGTTGGT--TGAAAAGCAGCTCTGGGTCAAACTTCAGTTTGAA 4248056 Query 9663 GTGGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 ||| || || || | ||||| || || | | || | ||| ||||| ||||| || Sbjct 4248055 GTGATAGCCACTCAAGTGCTGTACGTAGTCTTCAATCACAATCTTAATAGTTTCTCC 4247999 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 9963 AACCTGATACTTCATCTTCCCATCCTTGAACAGACGCAGCTTATGCTGCTTCTCCAACGT 10022 ||||||||| ||||| || ||||||||||| || |||||||||||||| |||| || | Sbjct 4247360 AACCTGATATTTCATTTTTCCATCCTTGAAAAGGCGCAGCTTATGCTGTCTCTCTAAAGA 4247301 Query 10023 TTCGCCGTAGATGTGACTGAGATCGACCT 10051 ||| || || |||||||| | || |||| Sbjct 4247300 TTCACCATAAATGTGACTTAAGTCCACCT 4247272 >seq123465 Length=11796121 Score = 111 bits (122), Expect = 2e-19 Identities = 175/248 (71%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || || | || || || ||||| || || || ||||| | ||||||||| Sbjct 52749 GTGGCCGTCTTGACAAGGTTGAAGCCCACGTCACCACCAAATGTGCTTGCCTTCCAGTAC 52808 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | || || |||||| |||| | | ||| || || | |||||| |||||||||| || Sbjct 52809 TCTGGAGAACAGATGGGGTTCCCTAAGAGGCCCTTAAGGGAAAAAGGAGCCCCCATTTCT 52868 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTG-TA 9111 || || ||||| || ||||||| ||| | || || | || | |||| | || Sbjct 52869 ATCATACTCTCCCCAAAGATGGAGTTCGGATGGCACTTCTCAA-GAAGTAGCCCCGGATA 52927 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || ||| | ||| | || ||| ||||| || | |||||||| || || ||||||||||| Sbjct 52928 GAATTCCAAAGCATTGATGTCTCCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTC 52987 Query 9172 ACCTACAA 9179 ||| ||| Sbjct 52988 CCCTGCAA 52995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722566136115400