Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq123197 145 2e-29 seq123338 143 6e-29 seq123318 134 3e-26 seq82137 125 2e-23 seq123218 114 3e-20 seq123262 107 5e-18 seq77427 107 5e-18 seq123040 100 7e-16 seq123324 89.7 1e-12 seq123612 86.0 1e-11 >seq123197 Length=3943935 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || || || ||||| ||||||||||| | ||||||||||| |||||| Sbjct 831043 CGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGCATGTTGTAGTCAGACAAAGTA 831102 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||| |||||||| || ||||| || | | |||||| ||| ||||||| Sbjct 831103 CATCCATCTTCCAGTTGCTTTCCCGCAAAGATCAGTCTTTTCTGGTCAGGAGGAATTCCT 831162 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || ||| || || || | | || || || | Sbjct 831163 TCCTTATCCTGGATCTTGGCCTTTACATTTTCTACTGTATCCGAGGGCTCAACCTCGAGA 831222 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| | || ||||| ||||| || Sbjct 831223 GTGATGGTCTTCCCCGTCCGGGTCTTCACGAAAATCTG 831260 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 200929 AAAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 200988 |||| ||| ||||| || |||||||| ||||||||||| | |||||| | || |||||| Sbjct 831143 AAAAGACTGATCTTTGCGGGAAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAAC 831084 Query 200989 GTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 | || || ||||| |||||||| || || ||||||||||| Sbjct 831083 ATGCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACTTCG 831043 >seq123338 Length=16093809 Score = 143 bits (158), Expect = 6e-29 Identities = 163/218 (75%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || |||||||| || |||| |||||| |||| | ||| | |||||| Sbjct 10050771 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 10050712 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| | ||||||||| || ||| ||||| ||| Sbjct 10050711 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 10050652 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| |||||| | | || || |||| ||||| ||| Sbjct 10050651 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 10050592 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || || |||||||| || || || |||||| Sbjct 10050591 TTGCCGGTCAGGGTTTTCACGAAGATCTG---CATTTT 10050557 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || |||||||| || |||| |||||| |||| | ||| | |||||| Sbjct 10050999 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 10050940 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||| |||||||| | ||||||||| || ||| || || ||| Sbjct 10050939 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCC 10050880 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| |||||| | | || || |||| ||||| ||| Sbjct 10050879 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 10050820 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 10050819 TTGCCGGTCAGGGTCTTCACGAAGATCTG 10050791 >seq123318 Length=9803767 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| |||||||| |||| ||||||||||| || || | |||||| Sbjct 4075209 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 4075150 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || ||||| ||||| || | ||||||||| || || |||||| || Sbjct 4075149 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCT 4075090 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | |||||| | | || || |||| ||||| || Sbjct 4075089 TGTATCTTCCCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTT 4075030 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || |||||||| || || Sbjct 4075029 TTACCAGTGAGGGTCTTCACAAAGATCTG 4075001 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| | ||| ||||| ||||| || |||| ||||||||||| || || | ||||| Sbjct 4075438 CAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 4075379 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||| || ||||| ||||| || | ||||||||| || || || ||| || Sbjct 4075378 TTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTC 4075319 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||| ||| |||| |||||| | | || || |||| ||||| || Sbjct 4075318 TTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 4075259 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || | || ||||| || || || Sbjct 4075258 CTTGCCGGTCAAGGTCTTCACGAAGATCTG 4075229 >seq82137 Length=2930 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| |||||||| |||| ||||||||||| || || | |||||| Sbjct 312 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 253 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || ||||| ||||| || | ||||||||| || || || ||| || Sbjct 252 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 193 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || |||| ||||| ||| Sbjct 192 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 133 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || ||||| || || || Sbjct 132 TTGCCGGTCAAGGTCTTCACGAAGATCTG 104 Score = 87.8 bits (96), Expect = 4e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| |||||||| |||| ||||||||||| || || | |||||| Sbjct 84 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 25 Query 199478 TCCAGCTGCTTTCCGGCGAAGAT 199500 |||||||| || ||||| ||||| Sbjct 24 TCCAGCTGTTTCCCGGCAAAGAT 2 >seq123218 Length=3948948 Score = 114 bits (126), Expect = 3e-20 Identities = 157/218 (72%), Gaps = 5/218 (2%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||||||| ||||| || ||||| ||||||||||| | |||||||| |||||| Sbjct 2102195 CGAAGTCTCAGTACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGT----CAAAGTA 2102250 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| ||| ||||| || || ||||| || | | |||||| ||| ||||||| Sbjct 2102251 CATCCATCTTTCAGTTGCTTGCCAGCAAAGATCAGTCTTTTCTGGTCAGGAGGAATTCCT 2102310 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| | ||| ||| || ||| | ||| || | | || || | | Sbjct 2102311 TCCTTATCCTGGACCTTGACCTTTACATTTTCTATGGTATCCGAGGGCTCGACCT-GAGA 2102369 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||| | || || | ||| ||||| || Sbjct 2102370 GTGATGGTCTTCCCCATCAGTGTCTCCACGAAAATCTG 2102407 >seq123262 Length=1326122 Score = 107 bits (118), Expect = 5e-18 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 ||||||| || || || ||||| ||||||||||| | ||||||||||| |||||| Sbjct 348148 AAGTCTCCACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATG 348089 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 |||||||| ||| ||||| || || ||||| || ||||||||| ||| ||||| ||| Sbjct 348088 TCCATCTTTCAGTTGCTTGCCAGCAAAGATCAG--TCTGCTGGTCAGGAGGAATTCTTTC 348031 Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 | ||| ||||| ||| || ||| | || |||| | || || || | || Sbjct 348030 CTTATTCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCAACCTCGAGAGT 347971 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| | || || | ||||| ||||| ||||| || Sbjct 347970 GATGATGTTCCCTATCAGAGTCTTCACGAAAATCTG 347935 >seq77427 Length=594 Score = 107 bits (118), Expect = 5e-18 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 ||||||| || || || ||||| ||||||||||| | ||||||||||| |||||| Sbjct 168 AAGTCTCCACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATG 227 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 |||||||| ||| ||||| || || ||||| || ||||||||| ||| ||||| ||| Sbjct 228 TCCATCTTTCAGTTGCTTGCCAGCAAAGATCAG--TCTGCTGGTCAGGAGGAATTCTTTC 285 Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 | ||| ||||| ||| || ||| | || |||| | || || || | || Sbjct 286 CTTATTCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCAACCTCGAGAGT 345 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| | || || | ||||| ||||| ||||| || Sbjct 346 GATGATGTTCCCTATCAGAGTCTTCACGAAAATCTG 381 >seq123040 Length=253963 Score = 100 bits (110), Expect = 7e-16 Identities = 121/164 (74%), Gaps = 3/164 (2%) Strand=Plus/Minus Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||||||||||||||| ||||| |||||||| | ||||||||| || ||| || || Sbjct 221156 CCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCCTCC 221097 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||| ||||| ||||||| |||| |||||| | | || || |||| ||| Sbjct 221096 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCCCTGGGCTCCACCTCCAGGGTG 221037 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || ||||| || || || || ||||| || || || |||||| Sbjct 221036 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTG---CATTTT 220996 >seq123324 Length=5182467 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||| | ||||||||||| |||||| | |||||||||||| ||||| || || |||| Sbjct 1097271 CCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGA 1097330 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || | |||||||| ||| ||||||| Sbjct 1097331 TCAGTCTTTGCTGGTCAGGAGGAATTCCT 1097359 >seq123612 Length=10710165 Score = 86.0 bits (94), Expect = 1e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||| || |||||||| || |||| |||||| |||| | ||| |||||| Sbjct 2052258 AGGACCAGGTACAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGTGGCCATCT 2052317 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTC 199532 ||||||||||| ||||| ||||| || | |||||||| || ||| |||| || Sbjct 2052318 TCCAGCTGCTTGCCGGCAAAGATAAGCCTTTGCTGGTCAGGGGGAATGCCTTTTC 2052372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176981658349877