Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq122573 187 2e-41 seq123268 158 9e-33 seq123338 104 2e-16 seq123657 102 6e-16 >seq122573 Length=499892 Score = 187 bits (206), Expect = 2e-41 Identities = 943/1480 (64%), Gaps = 26/1480 (2%) Strand=Plus/Plus Query 517213 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 517272 ||| ||||| || || || |||| ||| ||| || || || || ||||| || Sbjct 323613 ATTGGTAATGGTGATCTTGTTGGCCTTGCCTGTGCTCTTGTCCATAGCTGTGACATTGAG 323672 Query 517273 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 517332 ||||||||||||||| | ||||| || || ||||| ||||| || || || | ||||| Sbjct 323673 AATACCATTGGCATCGATGTCAAAGGTCACCTCAATCTGAGGCACTCCCCTGGGTGCAGG 323732 Query 517333 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 517392 ||||| || || || ||| ||||| || || || ||| | | || Sbjct 323733 AGGGATTCCAGTCAGATCAAAGCGCCCCAGCAGGTTGTTGTCCCGAGTCATGGCCCTCTC 323792 Query 517393 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 517452 ||||| | | ||||| || | | ||||| |||||||| || || || | ||| Sbjct 323793 GCCCTCATACACCTGGATCAGCACGCCCGGCTGATTGTCTGAATAGGTGGTGAAAA-TCT 323851 Query 517453 GGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAAT-AATATTGGTCATAATACCACCT 517510 | | | || || || || | ||| | | || |||| | |||| | || ||| Sbjct 323852 GTGTCTGCTTTGTGGGGATGGTGGAGTTGCGCTTGATTAATACAG-TCATGACTCCCCCT 323910 Query 517511 GCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTT 517570 || || || || || | ||| || |||| || || | | | | | || | ||| Sbjct 323911 GCAGTCTCCAACCCTAAAGACAGGGGAGCCACGTCCAACAAAAGGAGGTCCTGTACCTTT 323970 Query 517571 TCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630 ||| | | || | | ||| ||||| |||| ||||| ||||| ||||| || ||| Sbjct 323971 TCAGACTTATCCCCCATCAAAATGGCTGCCTGAACTGCAGCCCCATAGGCAACTGCCTCA 324030 Query 517631 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGAAGTTGTCT 517689 || || || | | | || || | |||||| || | | || || | | | Sbjct 324031 TCGGGGTTGATGCTCTTGTTGAGATCACGACCATTAAAGTAGTCCTGCAACAGCCTCTGA 324090 Query 517690 TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 517749 |||||||| || || | || || || ||||| ||||| ||||| | | | |||||| Sbjct 324091 -ACCTTAGGGATTCGCGTAGAGCCCCCTACTAAGACAATGTCATGGATTTTAGCTTTATC 324149 Query 517750 CAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGA 517809 || || | |||| | | | || || || || || || | ||||||| ||||| Sbjct 324150 CATCTTGGCATCCCGAAGAGCCTTCTCCACAGGCTCCAGGGTGCCCCTAAACAGGTCTGC 324209 Query 517810 ACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAAC 517867 ||| | ||||| || ||||| || || || | || || ||||| ||||| | Sbjct 324210 ACACAACTCTTCAAACCGGGCTCTGGT--GATGGATGTGTAGAAGTCAATGCCTTCATAA 324267 Query 517868 AAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCA 517927 | || |||| ||| | | | || || ||| || || | | || || | ||| Sbjct 324268 AGTGAGTCAATTTCCAAGTTGGCCTGGGTGCTAGATGACAGGGTCCTCTTGGCCCTTTCG 324327 Query 517928 CATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATTGATTCAAATCTGTTTTATA 517983 || || || | | | | | || |||| | ||| |||| || | |||| Sbjct 324328 CAGGCAGTGCGCAACCGCCTCACAGCCCGCTTGTTCTGGCTGATG----TCCTTCTTATG 324383 Query 517984 TTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCC 518043 ||| |||||||| ||||| ||| | | ||||| | || |||||||| || || || Sbjct 324384 TTTCCTCTTGAACTCTTCCACAAAGTGGCTCACAAGCCTGTTGTCAAAATCCTCTCCACC 324443 Query 518044 CAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAG 518103 ||| | || | || | || || | || | |||| ||||| || | | || | Sbjct 324444 CAAGTGGGTGTCCCCAGCTGTGGCCTTAACCTCAAAAATCCCATCATCTATGGTCAGGAC 324503 Query 518104 AGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TCATT-TCTTTGTCT 518161 | |||||| || || ||||||| |||||| || | |||| || | || || | Sbjct 324504 GGACACATCAAATGTGCCTCCACCCAGATCAAAGATCAAGACATGTCGCTCTCCCTGACC 324563 Query 518162 TGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 518221 || ||| | | ||| ||||| |||| ||||||||||| |||||||| |||||||| | Sbjct 324564 TGCTTTATCT-AAG-CCATAGGCAATGGCAGCAGCAGTGGGTTCATTGATAATTCTTAGC 324621 Query 518222 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 518281 ||||| ||||| || || || ||||| || ||||| || | ||| || || || || Sbjct 324622 ACATTGAGACCTGCGATAACACCCGCATCCTTGGTGGCCTGGCGTTGAGAGTCATTGAAG 324681 Query 518282 TATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTT 518341 || || || ||||| || || |||| || || | || | | |||| || || Sbjct 324682 TAGGCTGGCACAGTGATCACAGCATTGGTGACAGTGTAGCCCAAAAAAGCCTCAGCAGTC 324741 Query 518342 TGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATT-- 518399 | ||||| ||| ||| | ||| || || |||| || || || | |||| || Sbjct 324742 TCCTTCATCTTAGTTAGTACCATAGAAGAGATTTCCTCAGGATAA-AAAGCTTTCTTTTC 324800 Query 518400 CATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCC 518459 | |||| || || || | | || || || |||| || |||| || |||| Sbjct 324801 CCCTTTG-TAGGACACCATTACCTTGGGCTTGCCTCCTTCATTGATTACTTGGAAAGGCC 324859 Query 518460 AGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 518519 | ||||||||||||||| || | |||||||| | ||| || || | ||||| | Sbjct 324860 AAAGTTTCATATCTGATTGCACGACAGGATCATTAAATTTTCTGCCTATCAGACGTTTGG 324919 Query 518520 CATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCA 518579 ||||||| | ||| || ||||| || || | || | ||||||||||| || || | Sbjct 324920 CATCAAAGACAGTGTTCTGGGGATTCATGGCTACCTGGTTCTTGGCTGCATCGCCGATGA 324979 Query 518580 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 518639 | | || || || || || | || || || || ||||| || || || || || | Sbjct 324980 GCCGCTCAGTATCAGTGAAGGCCACGTAGCTGGGGGTGGTGCGGTTGCCCTGGTCGTTGG 325039 Query 518640 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 518679 | || || || || || || | ||| | || || ||||| Sbjct 325040 CGATGATCTCCACCTTGCCGTGTTGGAACACCCCCACACA 325079 >seq123268 Length=2790592 Score = 158 bits (174), Expect = 9e-33 Identities = 885/1401 (63%), Gaps = 52/1401 (4%) Strand=Plus/Plus Query 517265 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 517324 ||||| ||||| ||||||||||| | |||||| |||||||| || |||| || | | Sbjct 1458906 ACATTGAGAATGCCATTGGCATCAATATCAAAAGTGACTTCGATCTGAGAAACACTACAG 1458965 Query 517325 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 517384 | ||||| | || ||| | | ||| | || || || ||||| || || | Sbjct 1458966 GG-GCAGGAGATATGCCTGTGAGTTCAAACTTACCAAGCAAGTTGTTATCCTTGGTCATG 1459024 Query 517385 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 517444 ||| ||||| || ||| || || ||| ||| || || || || || || || Sbjct 1459025 GTTCACTCACCTTCATAAACCTGAATGAGAACACCAGGCTGGTTGTCAGAGTAGGTGGTG 1459084 Query 517445 AATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 517503 || | |||| || | || |||||| || || || | | | | | ||| | Sbjct 1459085 AA-AGTCTGCATCTGCTTGGTAGGAATGGTGGTATTGTGCTTGAGGACACT---CATGAC 1459140 Query 517504 ACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTG 517563 ||||| || ||||| | ||||| ||||| ||||||||||| || | | | ||| Sbjct 1459141 TCCACCAGCAGTTTCAATTCCAAGGGAAAGGGGAGTGACATCCGACAGCAGCAAGTCTTG 1459200 Query 517564 AAGTTTTTCATCAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAA 517622 || ||| ||| | | ||| |||| ||| ||| | || | ||| ||||||||||||| Sbjct 1459201 AACATTT-CATATTTGTTTCCAGACAA-AATGGCTACCTGGACAGCTGCACCATATGCAA 1459258 Query 517623 CAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAA 517682 ||||||| |||| || | | | ||| |||| ||| | | | || || | |||| Sbjct 1459259 GAGCTTCACCAGGGTTGATGCTCTTATTCAGTTCTTTCCTACTAAAGAAGTCCTGGAGAA 1459318 Query 517683 GTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 517741 || ||| | ||| || || ||| ||| || || || || ||||| | | | ||| Sbjct 1459319 ATT-TCTGAAGCTTGGGGATGTGAGTTGAGCCACCCACCAAAACAATATTGCGGATCTGA 1459377 Query 517742 GATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAAC 517801 || || ||||| || | |||| | |||| || | | || | | | ||| Sbjct 1459378 GACTTGTCCAGCTTGGCATCCTGAAGGGCTTTCTCCATAGTGTCCCGGGTGCCACGGAAC 1459437 Query 517802 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCT 517861 ||||| | | | |||||| ||| ||| | | |||||| Sbjct 1459438 AAGTCAGCATTCAATTCTTCAAATC-----------AGA----------AGTTGATTCCT 1459476 Query 517862 TCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCA 517921 || | | ||||||| ||||| | | || || ||||| || | | |||||| Sbjct 1459477 TCATAGAGGGAATCAATCTCAATACTGGCCTGGGTTCTGGAAGAGAGAGTGTGCTTAGCA 1459536 Query 517922 CGTTCACATGCTGTCCTTAGTCTTCGTAAGGC----TTTTGCTGATTGATTCAAATCTGT 517977 | ||| | || || | || | | | || || | || | |||| ||| | Sbjct 1459537 AGCTCAGAAGCAGTACGGAGGCAACAGACAGCCCTCTTGTTCTCACTGAT----ATCCTT 1459592 Query 517978 TTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAATCT 518035 || | ||| |||||||| ||| ||| | ||| | || | ||| ||||| ||| Sbjct 1459593 CTTGTGTTTGCTCTTGAACTCTGCAAGGAA--ATGGTTGACCCTGCCATTGTCAAAGTCT 1459650 Query 518036 TCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGA 518095 || || ||| |||| ||| | ||| | | || | || | |||||| |||| | Sbjct 1459651 TCTCCAGACAA----GTATCTCCAGCTATAGATTTAACCTCAAAGATTCCATCCTCAATA 1459706 Query 518096 GACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCT 518155 | | | | |||||| | |||||||| | |||||| || || ||||| | ||| Sbjct 1459707 GTGAGGATTGACACATCAAAA-TGCCACCACCTAAATCAAAGATCAGCACATTTCTCTCT 1459765 Query 518156 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 518215 | |||| || | ||||| |||| ||||||||||||||||||| | || ||| Sbjct 1459766 GCTCCAACCCTTTTGTCTAAGCCATAGGCAATAGCAGCAGCAGTTGGTTCACTGATGATT 1459825 Query 518216 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 518275 || | |||| ||||||||||| ||| |||||||| || || || | || || || Sbjct 1459826 CTAAGTACATGGAGACCAGCAATAGTTCTAGCATCTTTGGTAGCCTGACGCTGAGAGTCA 1459885 Query 518276 TTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTT 518335 ||||| || ||||| || || | ||| || | ||| | || |||| | | | Sbjct 1459886 TTAAAGTAGGCAGGTACTGTGACAACAGCGTTGGTTCCAGTCTTCCCAAGGCAGACTTCT 1459945 Query 518336 GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTG 518395 || ||| |||| | || | | | ||| ||||| || | ||||| || | ||| Sbjct 1459946 GCAATTTCTTTCCTCTTTGTCAGGACCATGGATGACATCTCCTCTGGATAAAAGCTCTTT 1460005 Query 518396 GATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAAT 518455 | || | ||| ||||| || | ||| | | || |||| || | || Sbjct 1460006 GTCTCTCCCTTGTATTCTACTTAAACCTTAGGTCTGCCAGCATCATTTGCCACCATGAAG 1460065 Query 518456 GGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGT 518515 ||||| | ||||||| | || || ||| |||| ||| || ||||| | | || Sbjct 1460066 GGCCAATGTTTCATAACAGACTGGACAACAGCATCATCAAATCTTCATCCAATAAGTTGT 1460125 Query 518516 TTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCA 518575 || |||||||||| || ||||| ||||| ||||| |||| | || || ||||| ||| Sbjct 1460126 TTGGCATCAAAAACCGTGTTGGTGGGATTCATTGCGACTTGGTTCTTTGCAGCATCACCA 1460185 Query 518576 ATCAGATGTTCT-GTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATC 518634 |||| || ||| || | ||||| | ||||| ||| || || | | | || ||||| Sbjct 1460186 ATCA-ATCGTCTGGTGTTAGTAAAGGTGACATAGCTTGGGGTGGTTC-AGTCCCCTGATC 1460243 Query 518635 ATTCGCAATAATTTCAACTTT 518655 ||| ||||| ||||| || || Sbjct 1460244 ATTGGCAATTATTTCCACCTT 1460264 >seq123338 Length=16093809 Score = 104 bits (114), Expect = 2e-16 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| || || ||||||||||||| ||||||||||| || ||| | || || ||| | Sbjct 2611137 TGTACGCTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 2611196 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 || |||| ||||| | ||||| |||||||| |||||||||||| | | |||||| | Sbjct 2611197 GTGGTTGGGAGAGACAAGTATGGGGTTTTCCCTCTTAGAGGAAAAATACTCAATGTTCGA 2611256 Query 635561 GATGCTAGTCCTAAA 635575 || ||| || |||| Sbjct 2611257 GAAGCTTCTCATAAA 2611271 >seq123657 Length=20155498 Score = 102 bits (112), Expect = 6e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||||| |||| ||||||||||||||| ||||| || |||| | || Sbjct 12486480 TTTTTGTCTAAGCCATAGGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCGAAGTACG 12486539 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| |||| |||||||| || || || | || || || |||||||| Sbjct 12486540 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTAAAATAG 12486599 Query 518285 GCAGGAACAGT 518295 ||||| || || Sbjct 12486600 GCAGGTACTGT 12486610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3774449230728286