Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq123338 149 1e-30 seq82137 141 2e-28 seq123318 140 7e-28 seq123197 118 2e-21 seq123218 109 1e-18 seq123262 98.7 2e-15 seq77427 98.7 2e-15 seq123453 84.2 5e-11 >seq123338 Length=16093809 Score = 149 bits (164), Expect = 1e-30 Identities = 162/214 (76%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | |||||| | |||||||| Sbjct 10050768 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 10050709 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | || ||||| || ||||||||||| || || || Sbjct 10050708 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 10050649 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| |||||||| |||||||| ||| ||||| || ||||| | ||| Sbjct 10050648 ATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 10050592 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || |||| ||||| ||||| | ||||||| Sbjct 10050591 TTGCCGGTCAGGGTTTTCACGAAGATCTGCATTT 10050558 >seq82137 Length=2930 Score = 141 bits (156), Expect = 2e-28 Identities = 167/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| ||||||||||| || || || ||||| || | || || Sbjct 322 TCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 263 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| ||||| || || || ||||| || | || |||||||| || ||||| Sbjct 262 GCGGCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCC 203 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||||||||| || || |||||||||||| |||||||| ||| ||||| || Sbjct 202 CTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTC 146 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || ||||| || || ||||| | ||||| Sbjct 145 CAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 101 >seq123318 Length=9803767 Score = 140 bits (154), Expect = 7e-28 Identities = 156/207 (75%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| |||||||||||||| || || ||||| || | || || | |||||||| ||||| Sbjct 4075429 GTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTG 4075370 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || ||||| || | || |||||||| || ||||| ||||||||||| || || Sbjct 4075369 TTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTT 4075310 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 |||||||||||| |||||||| ||| ||||| || ||||| | ||||| || Sbjct 4075309 GGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTCTTGCC 4075253 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || || ||||| | ||||| Sbjct 4075252 GGTCAAGGTCTTCACGAAGATCTGCAT 4075226 Score = 122 bits (134), Expect = 2e-22 Identities = 124/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| ||||||||||| || || || ||||| || | || || Sbjct 4075219 TCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 4075160 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| ||||| || || || ||||| || | || |||||||| || ||||| Sbjct 4075159 GCGGCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCC 4075100 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 |||||| ||||| || || |||||| |||||||||||||| Sbjct 4075099 TTCTTTTTCTTGTATCTTCCCCTTGACATTCTCAATGGTGTC 4075058 >seq123197 Length=3943935 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || || |||||||||||||| ||||| || ||||| || | | ||| | Sbjct 831046 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGCATGTTGTAGTCAGACAAAGTACAT 831105 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || ||||| |||| || ||||| |||||||| ||||| Sbjct 831106 CCATCTTCCAGTTGCTTTCCCGCAAAGATCAGTCTTTTCTGGTCAGGAGGAATTCCTTCC 831165 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || | || ||||| || || || || || Sbjct 831166 TTATCCTGGATCTTGGCCTTTACATTTTCTACTGTATCCGAGGGCTCAACCTCGAGAGTG 831225 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || ||| || || ||||| | ||||| Sbjct 831226 ATGGTCTTCCCCGTCCGGGTCTTCACGAAAATCTGCAT 831263 >seq123218 Length=3948948 Score = 109 bits (120), Expect = 1e-18 Identities = 121/161 (75%), Gaps = 4/161 (2%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||| ||||| |||||||||||||| |||||||| ||||| || | ||| | Sbjct 2102198 AGTCTCAGTACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTC----AAAGTACAT 2102253 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||||| || ||||| || || ||||| |||| || ||||| |||||||| ||||| Sbjct 2102254 CCATCTTTCAGTTGCTTGCCAGCAAAGATCAGTCTTTTCTGGTCAGGAGGAATTCCTTCC 2102313 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083 || || || | || ||| || || || ||||| ||||| Sbjct 2102314 TTATCCTGGACCTTGACCTTTACATTTTCTATGGTATCCGA 2102354 >seq123262 Length=1326122 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||| | || || |||||||||||||| |||||||| ||||| || | | ||| Sbjct 348147 AGTCTCCACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGT 348088 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||||| || ||||| || || ||||| |||| || ||||| |||||||| | ||| Sbjct 348087 CCATCTTTCAGTTGCTTGCCAGCAAAGATCAGTC--TGCTGGTCAGGAGGAATTCTTTCC 348030 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || | || || || ||| || || || || || || || || || || || || Sbjct 348029 TTATTCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCAACCTCGAGAGTG 347970 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | | || ||| ||| ||| || ||||| | ||||| Sbjct 347969 ATGATGTTCCCTATCAGAGTCTTCACGAAAATCTGCAT 347932 >seq77427 Length=594 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||| | || || |||||||||||||| |||||||| ||||| || | | ||| Sbjct 169 AGTCTCCACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGT 228 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||||| || ||||| || || ||||| |||| || ||||| |||||||| | ||| Sbjct 229 CCATCTTTCAGTTGCTTGCCAGCAAAGATCAGTC--TGCTGGTCAGGAGGAATTCTTTCC 286 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || | || || || ||| || || || || || || || || || || || || Sbjct 287 TTATTCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCAACCTCGAGAGTG 346 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | | || ||| ||| ||| || ||||| | ||||| Sbjct 347 ATGATGTTCCCTATCAGAGTCTTCACGAAAATCTGCAT 384 >seq123453 Length=12721753 Score = 84.2 bits (92), Expect = 5e-11 Identities = 104/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| |||||||||||| | | || ||||| || | || || | ||||||||| |||| Sbjct 4289806 GTGCAGAGTGGACTCTCT--GGATGTTGTATTCAGACAGGGTGCACCCATCTTC-AGCTC 4289750 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||||| ||| | || | | |||||| | | ||||| |||||||||||||| || Sbjct 4289749 TTTCCCTGCAAAGGTCAGCCTCCGCTGGTCTAGGTGGATGCCCTCTTTGTCTTGAATCTT 4289690 Query 195057 TTGCTTGACGTTCTCAATGG 195076 |||||| ||||| |||| Sbjct 4289689 GGCCTTGACATTCTCGATGG 4289670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1107655923410577