Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq123268 168 5e-36 seq122573 163 2e-34 seq123657 125 6e-23 seq123197 100 2e-15 seq123351 96.9 3e-14 seq123318 89.7 4e-12 >seq123268 Length=2790592 Score = 168 bits (186), Expect = 5e-36 Identities = 330/481 (69%), Gaps = 5/481 (1%) Strand=Plus/Minus Query 550049 AAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTC 550108 || || ||||| |||||||||||||| || | | |||| || ||| ||||| | || Sbjct 1460264 AAGGTGGAAATAATTGCCAATGATCAGGGGA-CTGAACCACCCCAAGCTATGTCACCTTT 1460206 Query 550109 ACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACC 550168 || | || || || |||||||||| ||||| | |||| | | ||||| ||| Sbjct 1460205 ACTAACACCAGACGATTGATTGGTGATGCTGCAAAGAACCAAGTCGCAATGAATCCCACC 1460146 Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 || || |||||||||| |||| | |||||| |||| ||| ||||| | ||| ||| Sbjct 1460145 AACACGGTTTTTGATGCCAAACAACTTATTGGATGAAGATTTGATGATGCTGTTGTCCAG 1460086 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288 | | |||||| |||||||| ||| | | |||| | |||| | |||| | || || Sbjct 1460085 TCTGTTATGAAACATTGGCCCTTCATGGTGGCAAATGATGCTGGCAGACCTAAGGTTTAA 1460026 Query 550289 GCTACTCATGAAGGATCTGTTAAACAATTTTCA-CCAGAACAAATTTCATCTATGGTTTT 550347 | || |||| | ||| | ||| | ||||| | || ||||| ||||| | Sbjct 1460025 G-TAGAATACAAGGGAGAGACAAAGAGCTTTTATCCAGAGGAGATGTCATCCATGGTCCT 1459967 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGCAGTAA 550406 | || | |||| ||| || | | |||| |||| | || | || || Sbjct 1459966 GACAAAGAGGAAAGAAATTGCAGAAGTCTGCCTTGGG-AAGACTGGAACCAACGCTGTTG 1459908 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | || ||||| || || ||||||||||| || ||||| ||||| ||||||||| || || Sbjct 1459907 TCACAGTACCTGCCTACTTTAATGACTCTCAGCGTCAGGCTACCAAAGATGCTAGAACTA 1459848 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 ||||||| || |||| ||| | || |||| |||||| ||||||||||| |||| |||| Sbjct 1459847 TTGCTGGTCTCCATGTACTTAGAATCATCAGTGAACCAACTGCTGCTGCTATTGCCTATG 1459788 Query 550527 G 550527 | Sbjct 1459787 G 1459787 >seq122573 Length=499892 Score = 163 bits (180), Expect = 2e-34 Identities = 375/555 (68%), Gaps = 16/555 (3%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 ||| || || || || | || ||||| || ||||| || || | ||| | || || Sbjct 325113 AGCCATCGGCATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTCCAACACGGCAA 325054 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || || || || ||||| || || || ||| | || || || || || | ||||| Sbjct 325053 GGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCCAGCTACGTGGCCTTCAC 324994 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTAC 550167 || ||||| | | | || |||||||| || | || ||||| || ||||| Sbjct 324993 TGATACTGAGCGGCTCATCGGCGATGCAGCCAAGAACCAGGTAGCCA-TG--AATCCCCA 324937 Query 550168 CAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCA 550227 || ||| | |||||||| |||||| | || || |||| ||||||||| | || || Sbjct 324936 GAACACTGTCTTTGATGCCAAACGTCTGATAGGCAGAAAATTTAATGATCCTGTCGTGCA 324877 Query 550228 GGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTA--TATT 550285 |||||||||| | ||||||||||||| | | |||| || || || | || | Sbjct 324876 ATCAGATATGAAACTTTGGCCTTTCCAAGTAATCAATGAAGGAGGCAAGCCCAAGGTAAT 324817 Query 550286 GAAG--CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGG 550343 | | |||| | | ||| | ||| |||| || || |||| || ||||||| Sbjct 324816 GGTGTCCTACAAAGG--GGAAAAG--AAAGCTTTTTATCCTGAGGAAATCTCTTCTATGG 324761 Query 550344 TTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGCA 550402 | ||| || ||||| | || || |||||| |||| | | | || || |||| Sbjct 324760 TACTAACTAAGATGAAGGAGACTGCTGAGGCTTTT-TTGGGCTACACTGTCACCAATGCT 324702 Query 550403 GTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGA 550462 || || ||||| ||||| || || |||||||| ||||| || || || || ||||| || Sbjct 324701 GTGATCACTGTGCCAGCCTACTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCGGGT 324642 Query 550463 CGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCA 550522 ||| || || || ||||| || | |||||||||||||| ||||||||||| |||| Sbjct 324641 GTTATCGCAGGTCTCAATGTGCTAAGAATTATCAATGAACCCACTGCTGCTGCCATTGCC 324582 Query 550523 TATGGACTTGATAAA 550537 ||||| | |||||| Sbjct 324581 TATGGCTTAGATAAA 324567 >seq123657 Length=20155498 Score = 125 bits (138), Expect = 6e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| | || || | || ||||| || |||||||||||||| || ||||| ||||| Sbjct 12486628 GTTACCAACGCTGTCGTCACAGTACCTGCCTATTTTAATGACTCTCAGCGTCAGGCTACC 12486569 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||||||| || || || ||||| || |||||||| || |||||| Sbjct 12486568 AAAGATGCTGGAACTATTGCTGGTCTCAACGTACTTCGAATCATCAATGAGCCAACTGCT 12486509 Query 550511 GCTGCACTTGCATATGG 550527 ||||| |||| ||||| Sbjct 12486508 GCTGCTATTGCCTATGG 12486492 Score = 102 bits (112), Expect = 7e-16 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || ||||| ||| |||||| ||||| | || | || || || ||| Sbjct 12487461 GGCATTGATCTTGGCACCACCTATTCTTGTGTGGGTGTCTTCCAGCACGGAAAGGTGGAA 12487402 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || |||||||||||||| || ||| |||| || ||| ||||| | || || || || Sbjct 12487401 ATAATTGCCAATGATCAGGGGAACCGAACCACCCCAAGCTATGTCGCCTTTACTGATACC 12487342 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATT 550177 |||| ||| | |||||||||||||| | |||| | | ||||| ||||| || || Sbjct 12487341 GAACGGTTAATCGGTGATGCAGCAAAGAACCAAGTCGCAATGAATCCCACCAACACGGTT 12487282 Query 550178 TTTG 550181 |||| Sbjct 12487281 TTTG 12487278 >seq123197 Length=3943935 Score = 100 bits (110), Expect = 2e-15 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 || |||||||| || ||| |||| || ||||| |||| | ||| | | ||||| Sbjct 831055 ACTAGATGAAGAGTGGACTCCTTTTGC--ATGTTGTAGTCAGACAAAGTACATCCATCTT 831112 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | ||||| ||||| ||||| || ||||||| ||| ||||||||||||||||| ||||| | Sbjct 831113 CCAGTTGCTTTCCCGCAAAGATCAGTCTTTTCTGGTCAGGAGGAATTCCTTCCTTATCCT 831172 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTT 563443 | || || ||||| || | |||||| | | | | |||||||| | || | Sbjct 831173 GGATCTTGGCCTTTACATTTTCTACTGTATCCGAGGGCTCAACCTCGAGAGTGATGGTCT 831232 Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || || | || || |||||||| ||||| Sbjct 831233 TCCCCGTCCGGGTCTTCACGAAAATCTGCAT 831263 >seq123351 Length=4234953 Score = 96.9 bits (106), Expect = 3e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| ||||||| | ||||||||||||||||| ||||| | ||||| || || || Sbjct 2594770 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 2594711 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 |||||||||||| |||||||||| | ||||| | | || |||||||| || Sbjct 2594710 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 2594658 >seq123318 Length=9803767 Score = 89.7 bits (98), Expect = 4e-12 Identities = 157/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 ||||| ||||| || || || || || ||| | ||| || ||||| |||| || | Sbjct 4075218 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGG--ATGTTGTAGTCAGACAGGG 4075161 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | | |||||| || ||||| |||||||| || || || ||||| || || || || | Sbjct 4075160 TGCGGCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGC 4075101 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCG 563430 ||||||| ||||| || || || || |||||| || ||| || | | || || Sbjct 4075100 CTTCTTTTTCTTGTATCTTCCCCTTGACATTCTCAATGGTGTCACTGGGC-TCCACCTCC 4075042 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||| | ||||||||||| || || || || || || ||||| Sbjct 4075041 AGAGTGATGGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCAT 4074998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4022503989496190