Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq123643 123 2e-23 seq123671 102 7e-17 seq123397 102 7e-17 seq123635 87.8 1e-12 >seq123643 Length=11888911 Score = 123 bits (136), Expect = 2e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 29875 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 29934 |||| ||| || |||||||| ||||| || | |||||||| ||||| ||||| || || Sbjct 574105 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGCACACCC 574164 Query 29935 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAA 29994 || |||||||||||||||| |||||| | ||| || || | ||| || | |||||| Sbjct 574165 AGGCCCATGTCCCCCGACCGCTGGTACAACTGGCAGGACAACTCCCCATTCACCACGTAG 574224 Query 29995 AACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| || | || |||||| || || || |||||||| Sbjct 574225 AACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAG 574262 Score = 82.4 bits (90), Expect = 6e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| || || || ||||||||||||||||| || || || || || | || Sbjct 576463 CATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCTAAATC 576522 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || || | |||| ||||||| ||||| ||||||| ||| || ||||| || Sbjct 576523 CCCTTCAGCTCTGTCGGAGAAGCCCAGGCCATCCAAGAAGTCTCGGGACCCATTGGCATC 576582 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 ||| || || || ||||| ||||| || || | ||| ||||| || Sbjct 576583 CCAAATTTTCACTCCCTTGGAAGAGAGTTCCTTAGCGTTGGTGGATCC 576630 >seq123671 Length=7472308 Score = 102 bits (112), Expect = 7e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || | || || ||||| |||| || || ||||| | Sbjct 48200 ATGAGCTCCCATTGGAGGTTCCTTGATTTCTCTACTGAGAACTATATTAATTCTGTCCTT 48141 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||| ||||| |||||||| |||||||| || Sbjct 48140 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCACATT 48081 Query 112200 CTGCTTGCCTCTGACTGAAGA 112220 ||| || ||| |||||||| Sbjct 48080 CTGTTTACCTTCTACTGAAGA 48060 Score = 102 bits (112), Expect = 7e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || | || || ||||| |||| || || ||||| | Sbjct 345071 ATGAGCTCCCATTGGAGGTTCCTTGACTTCTCTCCTGAGAACTATATTAATTCTGTCCTT 345012 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||| ||||| |||||||| |||||||| || Sbjct 345011 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCACATT 344952 Query 112200 CTGCTTGCCTCTGACTGAAGA 112220 ||| || ||| |||||||| Sbjct 344951 CTGTTTACCTTCTACTGAAGA 344931 >seq123397 Length=8552932 Score = 102 bits (112), Expect = 7e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || || ||||| |||| || || ||||| | Sbjct 8018896 ATGAGCTCCCTTTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 8018955 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||| ||||| |||| ||| |||||||| || Sbjct 8018956 TAAAGGTCAATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACGCATAATCACCACATT 8019015 Query 112200 CTGCTTGCCTCTGACTGAAGA 112220 ||| || ||| |||||||| Sbjct 8019016 CTGTTTACCTTCTACTGAAGA 8019036 >seq123635 Length=11332318 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 6736881 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 6736940 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| ||||| |||||||| ||||||| ||||| || ||| Sbjct 6736941 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 6736988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407978010152363