Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq123338 105 5e-18 seq123318 87.8 1e-12 >seq123338 Length=16093809 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || |||||||| | | ||| | | |||| |||| ||| Sbjct 10050762 TGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGC 10050703 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | ||| || || || ||||||||||| ||||| || || || Sbjct 10050702 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTG 10050643 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | |||||| | ||||| || || |||| || |||||||| Sbjct 10050642 GCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 10050583 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||||| || || |||||||| Sbjct 10050582 AGGGTTTTCACGAAGATCTGCAT 10050560 >seq123318 Length=9803767 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || ||||| || | | || | | |||| |||| || Sbjct 4075200 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGT 4075141 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| | ||| || || || || ||||||||||| ||||| || || Sbjct 4075140 TTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCTTGTATCTTC 4075081 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||| | ||||| || ||||||| ||||| || || Sbjct 4075080 CCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTTTTACCAGTG 4075021 Query 101447 AAAGTTTTTACAAATATCTGCATGGT 101472 | || || ||||| |||||||| || Sbjct 4075020 AGGGTCTTCACAAAGATCTGCATTGT 4074995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395658124119867