Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq123268 145 5e-29 seq123657 105 4e-17 seq123351 87.8 1e-11 >seq123268 Length=2790592 Score = 145 bits (160), Expect = 5e-29 Identities = 327/483 (68%), Gaps = 9/483 (2%) Strand=Plus/Minus Query 474386 AAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTT 474445 || || ||||||||||||||||| || || | | |||| || ||| ||||| | ||| Sbjct 1460264 AAGGTGGAAATAATTGCCAATGATCAGGGGACT-GAACCACCCCAAGCTATGTCACCTTT 1460206 Query 474446 ACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT 474505 ||| | || || | ||||| |||||||| || | |||| ||| ||||| Sbjct 1460205 ACTAACACCAGACGATTGATTGGTGATGCTGCAAAGAACCAAGTCGCAATGAATCCCACC 1460146 Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 || || |||||||||| ||| | | ||||| | | ||||||||| | |||||| Sbjct 1460145 AACACGGTTTTTGATGCCAAACAACTTATTGGATGAAGATTTGATGATGCTGTTGTCCAG 1460086 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA 474625 |||| |||| |||||||| || | |||| ||||| || ||| | ||| | | || Sbjct 1460085 TCTGTTATGAAACATTGGCCCTTCATGGTGGCAAATGATGCTGGCAGACCTAAGGTTTAA 1460026 Query 474626 G--CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683 | |||||| | || || || || |||| || || | || || || ||||| Sbjct 1460025 GTAGAATACAAG--GGAGAGACAAAGAGCTTTTATCCAGAGGAGATGTCATCCATGGTCC 1459968 Query 474684 TAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGT 474741 | | || | |||| ||| || || || | ||||| |||| | ||| | || || Sbjct 1459967 TGACAAAGAGGAAAGAAATTGCAGAAGTC-TGCCTTGG-GAAGACTGGAACCAACGCTGT 1459910 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 | || || || || || |||||||| ||||| ||||| || || |||||||| ||| Sbjct 1459909 TGTCACAGTACCTGCCTACTTTAATGACTCTCAGCGTCAGGCTACCAAAGATGCTAGAAC 1459850 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861 ||||| ||||| |||| | | || || | ||||||||| || || || |||| || Sbjct 1459849 TATTGCTGGTCTCCATGTACTTAGAATCATCAGTGAACCAACTGCTGCTGCTATTGCCTA 1459790 Query 474862 TGG 474864 ||| Sbjct 1459789 TGG 1459787 >seq123657 Length=20155498 Score = 105 bits (116), Expect = 4e-17 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 || || ||||| ||| ||||| | ||| | || ||| || |||||||| ||| | Sbjct 12485059 ACCAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACAGGCATACCTCCTGCCCCCCGT 12485000 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || |||||||| |||||||| ||||||||||||||||| ||||| ||||| |||||| || Sbjct 12484999 GGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAATGGCATTCTCAATGTTTCT 12484940 Query 476171 GCTTGTGATAA 476181 ||| ||||| Sbjct 12484939 GCTGTGGATAA 12484929 Score = 89.7 bits (98), Expect = 3e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || || || || ||||||||||| ||||| ||||| || || |||||||| |||| ||| Sbjct 12486610 ACAGTACCTGCCTATTTTAATGACTCTCAGCGTCAGGCTACCAAAGATGCTGGAACTATT 12486551 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 || ||||| || || | || || || ||||| ||||| || || || |||| ||||| Sbjct 12486550 GCTGGTCTCAACGTACTTCGAATCATCAATGAGCCAACTGCTGCTGCTATTGCCTATGG 12486492 >seq123351 Length=4234953 Score = 87.8 bits (96), Expect = 1e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || ||| ||||||| ||||||| ||||||||||| |||||| | ||||| || ||||| Sbjct 2594770 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 2594711 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACC 474840 |||||||| |||| ||||| || | ||||| | | || || ||||| || Sbjct 2594710 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 2594658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3262670171262788