Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq123370 352 3e-92 seq123472 167 3e-36 seq38406 161 1e-34 seq123193 98.7 1e-15 >seq123370 Length=4461615 Score = 352 bits (390), Expect = 3e-92 Identities = 677/986 (69%), Gaps = 13/986 (1%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| ||||||| ||| |||| ||| || | ||||| ||| ||||||||| || || Sbjct 3780461 CAGATGCTCGTCCAAACACTGGATGGCAAAGAGGTCAATGTCCGTGTCGAATTTGTTGGC 3780402 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| || | || ||||| || ||| || | ||||| ||||| || Sbjct 3780401 AAACAAGTGGTGCATGTGCAACAG---CCAGTTCAAGTCACCAGCTCCGAAAACGCACAC 3780345 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || || | ||| |||||| |||| |||||||| | || || || | ||||| ||||| Sbjct 3780344 AGAGCGAACGTGGACGCCGCTGCACGGCGGGTAGGGGGCGCCCTTGGAAACGTCTCCTTC 3780285 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 |||||||||| || ||||||||||| ||||| |||||||| || ||||| || || || Sbjct 3780284 AAAGTACTGCCATTTAACAAACCTGGCAATCGCTTGCATGTCAGACGTGTCATACTTATA 3780225 Query 160292 -CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTT 160350 | | ||| || | | | |||| | |||| || | ||| | |||||||| || | | Sbjct 3780224 GCTTAAGGACAATGACCCTGGGA-CTTCGGGGATCCTCTGAATAGTGGCCCAGAGATACT 3780166 Query 160351 CGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCA 160410 |||| |||||||| ||||| || | ||| ||||| |||| | || || | | | Sbjct 3780165 CGTCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGTATATTTTGGTTCTGGA 3780106 Query 160411 GAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTA 160470 | |||| || || || | || ||||| || || ||||| || || | ||| Sbjct 3780105 GCACGTACTCCACATATTCCCTACTGACCACAAAATAGGCACTGCCTGAAAACAGAGGTG 3780046 Query 160471 TGGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGC 160529 | | ||| || ||| ||| ||| || |||| | || | ||| ||||| | Sbjct 3780045 TTTCAAGAGGTGGA-TGTATTTTGTCAGTCCCCATGTTTGTCAGCTTTCCATTCACGACT 3779987 Query 160530 GCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTG 160589 | | |||| |||||||| | |||| || | |||||| || || |||| || Sbjct 3779986 TCATAATGCTTTTTCCACCTTTCTTTCTTATGGGATGGCATTTTCTCTGTTTCTAAGTTG 3779927 Query 160590 TTGGCACCG-TCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAA 160648 || | || || | | || |||| | |||| || || ||||| || || | ||||| Sbjct 3779926 TTCTCGCCCATCAATAGCTTG-AGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAA 3779868 Query 160649 GTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCT 160708 || ||||||| | ||||||| ||||||||| || ||| | || |||||| Sbjct 3779867 ATCCATACCGCAGAGATTTATCAGGTACTTCCAGCCTGCATTCATCTGGTAGAGGTCCTG 3779808 Query 160709 CATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTT 160768 |||||| |||| || ||||| || ||||||||||| || ||||| ||| |||| || | Sbjct 3779807 CATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGACGCATACACCACGCTCTCCAGCTG 3779748 Query 160769 ACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG--AAAGAAC 160826 |||||| |||||||| ||| ||| || || ||| | ||| || | ||| ||| | Sbjct 3779747 ACTGGCGACAAAGACATTACTGAAGCAGGATGCGA-TGCCAACAGCTGCAGCCAAAAAGG 3779689 Query 160827 ATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCC 160886 || || || | ||| |||||||| | ||||| | ||||||||| ||||||||| Sbjct 3779688 AT-TTCTCTGATTTTGCATCCACGTGAATACAATAGAAATTCTGAGGCATATAGATGGCC 3779630 Query 160887 CTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGA 160946 || || | ||| || | ||| || || || ||||| | ||| ||||| || ||||| ||| Sbjct 3779629 CTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATAGAATATGCTATTGGA 3779570 Query 160947 AACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAA 161006 || | | ||| || ||| || | | || | || || ||| |||| || ||| || Sbjct 3779569 AATCCCGCCTCTTCTTTACTAAGTGGTTCTGTAATATATTTGCGCTTCTTAATGAAAGAA 3779510 Query 161007 TCACAATCCCGCGTCATGTTGATATA 161032 ||||||| | |||||||| || || Sbjct 3779509 GCACAATCACCAGTCATGTTTATGTA 3779484 >seq123472 Length=3018059 Score = 167 bits (184), Expect = 3e-36 Identities = 227/317 (72%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 ||||| | ||| | | |||| || ||||| || || || || || || ||||||||| || Sbjct 1968658 AGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGCACTTG 1968599 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || | || || |||| |||||||||||| || || | |||||||| ||| ||| Sbjct 1968598 TAACACGCCTCATCTTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGAGTCCC 1968539 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | ||| || ||||| | || || || | ||| || |||||||| |||||||||||| Sbjct 1968538 AGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCGTGGTTCTCG 1968479 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 ||| ||||| |||||| || ||||| ||||| || || ||||| || || |||| | Sbjct 1968478 CTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAATCAAA 1968419 Query 168393 ACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGC 168452 || || | | | ||| || ||||| | ||||| || ||||||||||| ||| Sbjct 1968418 ACTTCCTGGGGATTTTTCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGCCCTCTT 1968359 Query 168453 TCATCTTGAGTTACGAC 168469 |||| || || || || Sbjct 1968358 ACATCCTGGGTCACCAC 1968342 Score = 114 bits (126), Expect = 1e-20 Identities = 160/221 (72%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 167883 GTTTGCC-GTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTT 167941 |||| || ||| ||| || ||||| |||| ||||| |||| ||| ||||| || || Sbjct 1971544 GTTTCCCTGTA-GTCGGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCC---TT 1971489 Query 167942 TCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATT 168001 || || || |||| || ||||| | || | ||||| || ||| ||| |||||||| Sbjct 1971488 CCCCACCTGTGTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGATGTTGTTCCATT 1971429 Query 168002 GCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATAT 168061 | | ||| | ||| | | || ||||||||||||||||| || ||||||||| | || Sbjct 1971428 GGGGTGTGACACGATCTCGGTACTGTTCTCAATCCCTGACCCAAAGACCTTCCAGGAGAT 1971369 Query 168062 TACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 | ||| || || || || | |||||||| || ||||||| Sbjct 1971368 CATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 1971328 >seq38406 Length=522 Score = 161 bits (178), Expect = 1e-34 Identities = 226/317 (71%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 ||||| | ||| | | |||| || ||||| || || || || || || ||||||||| || Sbjct 21 AGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGCACTTG 80 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || | || || |||| |||||||||||| || || | |||||||| ||| ||| Sbjct 81 TAACATGCCTCATCTTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGAGTCCC 140 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | ||| || ||||| | || || || | ||| || |||||||| || ||||||||| Sbjct 141 AGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGTTCTCG 200 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 ||| ||||| |||||| || ||||| ||||| || || ||||| || || |||| | Sbjct 201 CTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAATCAAA 260 Query 168393 ACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGC 168452 || || | | | ||| || ||||| | ||||| || ||||||||||| ||| Sbjct 261 ACTTCCTGGGGATTTTTCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGCCCTCTT 320 Query 168453 TCATCTTGAGTTACGAC 168469 |||| || || || || Sbjct 321 ACATCCTGGGTCACCAC 337 >seq123193 Length=20752209 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 176182 TCCATTGAAAGTATGTGTTGTAGATTGTGTTGTTTGTATCTAGTATATGTAGATATTTTA 176241 |||| | |||||| | ||| | | | |||||| | |||| | | ||||| || Sbjct 15724997 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTGTCTACTTCCTTCAGATACTTAG 15724938 Query 176242 CTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGAATGTAGT 176301 |||| |||| || |||| |||||| | ||||| || |||| | || |||||| || | Sbjct 15724937 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 15724878 Query 176302 TTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGC 176361 | ||||| |||| || || || || ||||| | || || | | || | || | Sbjct 15724877 TCTCATAGTTTTCCCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCAT 15724818 Query 176362 GGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACT 176421 ||||| |||||||| |||||| || |||| |||||||||||||| | | ||| || | Sbjct 15724817 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 15724758 Query 176422 TACA 176425 | || Sbjct 15724757 TGCA 15724754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576292539511560