Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq122573 187 2e-41 seq123268 167 2e-35 seq123338 109 4e-18 seq123657 102 6e-16 >seq122573 Length=499892 Score = 187 bits (206), Expect = 2e-41 Identities = 943/1480 (64%), Gaps = 26/1480 (2%) Strand=Plus/Plus Query 281380 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 281439 ||| ||||| || || || |||| ||| ||| || || || || ||||| || Sbjct 323613 ATTGGTAATGGTGATCTTGTTGGCCTTGCCTGTGCTCTTGTCCATAGCTGTGACATTGAG 323672 Query 281440 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 281499 ||||||||||||||| | ||||| || || ||||| ||||| || || || | ||||| Sbjct 323673 AATACCATTGGCATCGATGTCAAAGGTCACCTCAATCTGAGGCACTCCCCTGGGTGCAGG 323732 Query 281500 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 281559 ||||| || || || ||| ||||| || || || ||| | | || Sbjct 323733 AGGGATTCCAGTCAGATCAAAGCGCCCCAGCAGGTTGTTGTCCCGAGTCATGGCCCTCTC 323792 Query 281560 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 281619 ||||| | | ||||| || | | ||||| |||||||| || || || | ||| Sbjct 323793 GCCCTCATACACCTGGATCAGCACGCCCGGCTGATTGTCTGAATAGGTGGTGAAAA-TCT 323851 Query 281620 GGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAAT-AATATTGGTCATAATACCACCA 281677 | | | || || || || | ||| | | || |||| | |||| | || || Sbjct 323852 GTGTCTGCTTTGTGGGGATGGTGGAGTTGCGCTTGATTAATACAG-TCATGACTCCCCCT 323910 Query 281678 GCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTT 281737 || || || || || | ||| || |||| || || | | | | | || | ||| Sbjct 323911 GCAGTCTCCAACCCTAAAGACAGGGGAGCCACGTCCAACAAAAGGAGGTCCTGTACCTTT 323970 Query 281738 TCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 ||| | | || | | ||| ||||| |||| ||||| ||||| ||||| || ||| Sbjct 323971 TCAGACTTATCCCCCATCAAAATGGCTGCCTGAACTGCAGCCCCATAGGCAACTGCCTCA 324030 Query 281798 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGAAGTTGTCT 281856 || || || | | | || || | |||||| || | | || || | | | Sbjct 324031 TCGGGGTTGATGCTCTTGTTGAGATCACGACCATTAAAGTAGTCCTGCAACAGCCTCTGA 324090 Query 281857 TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 281916 |||||||| || || | || || || ||||| ||||| ||||| | | | |||||| Sbjct 324091 -ACCTTAGGGATTCGCGTAGAGCCCCCTACTAAGACAATGTCATGGATTTTAGCTTTATC 324149 Query 281917 CAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGA 281976 || || | |||| | | | || || || || || || | ||||||| ||||| Sbjct 324150 CATCTTGGCATCCCGAAGAGCCTTCTCCACAGGCTCCAGGGTGCCCCTAAACAGGTCTGC 324209 Query 281977 ACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAAC 282034 ||| | ||||| || ||||| || || || | || || ||||| ||||| | Sbjct 324210 ACACAACTCTTCAAACCGGGCTCTGGT--GATGGATGTGTAGAAGTCAATGCCTTCATAA 324267 Query 282035 AAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCA 282094 | || |||| ||| | | | || || ||| || || | | || || | ||| Sbjct 324268 AGTGAGTCAATTTCCAAGTTGGCCTGGGTGCTAGATGACAGGGTCCTCTTGGCCCTTTCG 324327 Query 282095 CATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATTGATTCAAATCTGTTTTATA 282150 || || || | | | | | || |||| | ||| |||| || | |||| Sbjct 324328 CAGGCAGTGCGCAACCGCCTCACAGCCCGCTTGTTCTGGCTGATG----TCCTTCTTATG 324383 Query 282151 TTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCC 282210 ||| |||||||| ||||| ||| | | ||||| | || |||||||| || || || Sbjct 324384 TTTCCTCTTGAACTCTTCCACAAAGTGGCTCACAAGCCTGTTGTCAAAATCCTCTCCACC 324443 Query 282211 CAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAG 282270 ||| | || | || | || || | || | |||| ||||| || | | || | Sbjct 324444 CAAGTGGGTGTCCCCAGCTGTGGCCTTAACCTCAAAAATCCCATCATCTATGGTCAGGAC 324503 Query 282271 AGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TCATT-TCTTTGTCT 282328 | |||||| || || ||||||| |||||| || | |||| || | || || | Sbjct 324504 GGACACATCAAATGTGCCTCCACCCAGATCAAAGATCAAGACATGTCGCTCTCCCTGACC 324563 Query 282329 TGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 282388 || ||| | | ||| ||||| |||| ||||||||||| |||||||| |||||||| | Sbjct 324564 TGCTTTATCT-AAG-CCATAGGCAATGGCAGCAGCAGTGGGTTCATTGATAATTCTTAGC 324621 Query 282389 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 282448 ||||| ||||| || || || ||||| || ||||| || | ||| || || || || Sbjct 324622 ACATTGAGACCTGCGATAACACCCGCATCCTTGGTGGCCTGGCGTTGAGAGTCATTGAAG 324681 Query 282449 TATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTT 282508 || || || ||||| || || |||| || || | || | | |||| || || Sbjct 324682 TAGGCTGGCACAGTGATCACAGCATTGGTGACAGTGTAGCCCAAAAAAGCCTCAGCAGTC 324741 Query 282509 TGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATT-- 282566 | ||||| ||| ||| | ||| || || |||| || ||| || | |||| || Sbjct 324742 TCCTTCATCTTAGTTAGTACCATAGAAGAGATTTCCTCAGGATAA-AAAGCTTTCTTTTC 324800 Query 282567 CATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCC 282626 | |||| || || || | | || || || |||| || |||| || |||| Sbjct 324801 CCCTTTG-TAGGACACCATTACCTTGGGCTTGCCTCCTTCATTGATTACTTGGAAAGGCC 324859 Query 282627 AATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 282686 || ||||||||||||||| || | |||||||| | ||| || || | ||||| | Sbjct 324860 AAAGTTTCATATCTGATTGCACGACAGGATCATTAAATTTTCTGCCTATCAGACGTTTGG 324919 Query 282687 CATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCA 282746 ||||||| | ||| || ||||| | || | || | ||||||||||| || || | Sbjct 324920 CATCAAAGACAGTGTTCTGGGGATTCATGGCTACCTGGTTCTTGGCTGCATCGCCGATGA 324979 Query 282747 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 282806 | | || || || || || | || || || || ||||| || || || || || | Sbjct 324980 GCCGCTCAGTATCAGTGAAGGCCACGTAGCTGGGGGTGGTGCGGTTGCCCTGGTCGTTGG 325039 Query 282807 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 282846 | || || || || || || | ||| | || || ||||| Sbjct 325040 CGATGATCTCCACCTTGCCGTGTTGGAACACCCCCACACA 325079 >seq123268 Length=2790592 Score = 167 bits (184), Expect = 2e-35 Identities = 887/1401 (63%), Gaps = 52/1401 (4%) Strand=Plus/Plus Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491 ||||| ||||| ||||||||||| | |||||| |||||||| || |||| || | | Sbjct 1458906 ACATTGAGAATGCCATTGGCATCAATATCAAAAGTGACTTCGATCTGAGAAACACTACAG 1458965 Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 281551 | ||||| | || ||| | | ||| | || || || ||||| || || | Sbjct 1458966 GG-GCAGGAGATATGCCTGTGAGTTCAAACTTACCAAGCAAGTTGTTATCCTTGGTCATG 1459024 Query 281552 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 281611 ||| ||||| || ||| || || ||| ||| || || || || || || || Sbjct 1459025 GTTCACTCACCTTCATAAACCTGAATGAGAACACCAGGCTGGTTGTCAGAGTAGGTGGTG 1459084 Query 281612 AATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 281670 || | |||| || | || |||||| || || || | | | | | ||| | Sbjct 1459085 AA-AGTCTGCATCTGCTTGGTAGGAATGGTGGTATTGTGCTTGAGGACACT---CATGAC 1459140 Query 281671 ACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTG 281730 |||||||| ||||| | ||||| ||||| ||||||||||| || | | | ||| Sbjct 1459141 TCCACCAGCAGTTTCAATTCCAAGGGAAAGGGGAGTGACATCCGACAGCAGCAAGTCTTG 1459200 Query 281731 AAGTTTTTCATCAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAA 281789 || ||| ||| | | ||| |||| ||| ||| | || | ||| ||||||||||||| Sbjct 1459201 AACATTT-CATATTTGTTTCCAGACAA-AATGGCTACCTGGACAGCTGCACCATATGCAA 1459258 Query 281790 CAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAA 281849 ||||||| |||| || | | | ||| |||| ||| | | | || || | |||| Sbjct 1459259 GAGCTTCACCAGGGTTGATGCTCTTATTCAGTTCTTTCCTACTAAAGAAGTCCTGGAGAA 1459318 Query 281850 GTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 281908 || ||| | ||| || || ||| ||| || || || || ||||| | | | ||| Sbjct 1459319 ATT-TCTGAAGCTTGGGGATGTGAGTTGAGCCACCCACCAAAACAATATTGCGGATCTGA 1459377 Query 281909 GATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAAC 281968 || || ||||| || | |||| | |||| || | | || | | | ||| Sbjct 1459378 GACTTGTCCAGCTTGGCATCCTGAAGGGCTTTCTCCATAGTGTCCCGGGTGCCACGGAAC 1459437 Query 281969 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCT 282028 ||||| | | | |||||| ||| ||| | | |||||| Sbjct 1459438 AAGTCAGCATTCAATTCTTCAAATC-----------AGA----------AGTTGATTCCT 1459476 Query 282029 TCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCA 282088 || | | ||||||| ||||| | | || || ||||| || | | |||||| Sbjct 1459477 TCATAGAGGGAATCAATCTCAATACTGGCCTGGGTTCTGGAAGAGAGAGTGTGCTTAGCA 1459536 Query 282089 CGTTCACATGCTGTCCTTAGTCTTCGTAAGGC----TTTTGCTGATTGATTCAAATCTGT 282144 | ||| | || || | || | | | || || | || | |||| ||| | Sbjct 1459537 AGCTCAGAAGCAGTACGGAGGCAACAGACAGCCCTCTTGTTCTCACTGAT----ATCCTT 1459592 Query 282145 TTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAATCT 282202 || | ||| |||||||| ||| ||| | ||| | || | ||| ||||| ||| Sbjct 1459593 CTTGTGTTTGCTCTTGAACTCTGCAAGGAA--ATGGTTGACCCTGCCATTGTCAAAGTCT 1459650 Query 282203 TCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGA 282262 || || ||| |||| ||| | ||| | | || | || | |||||| |||| | Sbjct 1459651 TCTCCAGACAA----GTATCTCCAGCTATAGATTTAACCTCAAAGATTCCATCCTCAATA 1459706 Query 282263 GACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCT 282322 | | | | |||||| | |||||||| | |||||| || || ||||| | ||| Sbjct 1459707 GTGAGGATTGACACATCAAAA-TGCCACCACCTAAATCAAAGATCAGCACATTTCTCTCT 1459765 Query 282323 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382 | |||| || | ||||| |||| ||||||||||||||||||| | || ||| Sbjct 1459766 GCTCCAACCCTTTTGTCTAAGCCATAGGCAATAGCAGCAGCAGTTGGTTCACTGATGATT 1459825 Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442 || | |||| ||||||||||| ||| |||||||| || || || | || || || Sbjct 1459826 CTAAGTACATGGAGACCAGCAATAGTTCTAGCATCTTTGGTAGCCTGACGCTGAGAGTCA 1459885 Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT 282502 ||||| || ||||| || || | ||| || | ||| | || |||| | | | Sbjct 1459886 TTAAAGTAGGCAGGTACTGTGACAACAGCGTTGGTTCCAGTCTTCCCAAGGCAGACTTCT 1459945 Query 282503 GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTG 282562 || ||| |||| | || | | | ||| ||||| || | |||||| || | ||| Sbjct 1459946 GCAATTTCTTTCCTCTTTGTCAGGACCATGGATGACATCTCCTCTGGATAAAAGCTCTTT 1460005 Query 282563 GATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAAT 282622 | || | ||| ||||| || | ||| | | || |||| || | || Sbjct 1460006 GTCTCTCCCTTGTATTCTACTTAAACCTTAGGTCTGCCAGCATCATTTGCCACCATGAAG 1460065 Query 282623 GGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGT 282682 ||||||| ||||||| | || || ||| |||| ||| || ||||| | | || Sbjct 1460066 GGCCAATGTTTCATAACAGACTGGACAACAGCATCATCAAATCTTCATCCAATAAGTTGT 1460125 Query 282683 TTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCA 282742 || |||||||||| || ||||| ||||| | ||| |||| | || || ||||| ||| Sbjct 1460126 TTGGCATCAAAAACCGTGTTGGTGGGATTCATTGCGACTTGGTTCTTTGCAGCATCACCA 1460185 Query 282743 ATCAGATGTTCT-GTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATC 282801 |||| || ||| || | ||||| | ||||| ||| || || | | | || ||||| Sbjct 1460186 ATCA-ATCGTCTGGTGTTAGTAAAGGTGACATAGCTTGGGGTGGTTC-AGTCCCCTGATC 1460243 Query 282802 ATTCGCAATAATTTCAACTTT 282822 ||| ||||| ||||| || || Sbjct 1460244 ATTGGCAATTATTTCCACCTT 1460264 >seq123338 Length=16093809 Score = 109 bits (120), Expect = 4e-18 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| || || ||||||||||||| ||||||||||| || ||| | || |||||| | Sbjct 2611137 TGTACGCTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 2611196 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 || |||| ||||| | ||||| |||||||| |||||||||||| | | |||||| | Sbjct 2611197 GTGGTTGGGAGAGACAAGTATGGGGTTTTCCCTCTTAGAGGAAAAATACTCAATGTTCGA 2611256 Query 400417 GATGCTAGTCCTAAA 400431 || ||| || |||| Sbjct 2611257 GAAGCTTCTCATAAA 2611271 >seq123657 Length=20155498 Score = 102 bits (112), Expect = 6e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||||| |||| ||||||||||||||| ||||| || |||| | || Sbjct 12486480 TTTTTGTCTAAGCCATAGGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCGAAGTACG 12486539 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| |||| |||||||| || || || | || || || |||||||| Sbjct 12486540 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTAAAATAG 12486599 Query 282452 GCAGGAACAGT 282462 ||||| || || Sbjct 12486600 GCAGGTACTGT 12486610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3734324980649406