Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq117207 116 3e-21 >seq117207 Length=4850167 Score = 116 bits (128), Expect = 3e-21 Identities = 702/1122 (63%), Gaps = 70/1122 (6%) Strand=Plus/Plus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||| | ||| || || | | | ||| || ||| |||| | |||||| | || | Sbjct 2163362 ATGCCTTCTATGTTGCGGACCTGGAATACATTCTGAAGAAACATCTGAGATGGTTGAAAG 2163421 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCA-GAACGACGAGAGAGTCCTC 20323 || | ||| |||| || ||||| || || || | | || | || | || | Sbjct 2163422 CTCTTCCTCTGGTCACCCCCTTTTATGCAGTCAAATGCAATGATAGCAGA-ACCGTAGTG 2163480 Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 ||||| || |||||| || || || |||||||||| ||| ||| || || || || Sbjct 2163481 AAGACACTCGCTGCCATTGGGACAGGATTTGACTGTGTCAGCAAGACTGAAATACAATTG 2163540 Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443 |||| | ||| || || | | |||| | ||| | | ||| ||||| ||||| || Sbjct 2163541 GTGCAGAGTCTCGGGGTGCCCCCAGAGAAGATTATCTATGCAAATCCATGTAAACAAGTG 2163600 Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503 || || || | |||||| || | | |||| | ||||||||||||||||||||| Sbjct 2163601 TCTCAGATTAAGTATGCTGCCAATAACAGAGTCCAGATGATGACTTTTGATAGTGAAGTT 2163660 Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTG 20563 ||||| | ||| ||| | || | | || ||| |||| || |||| | Sbjct 2163661 GAGCTGATGAAAGTTGCCAGGGCACATCCAAAGGCCAAGTTGGTTTTGCGGATCACCACT 2163720 Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGC 20623 ||||| || || ||| | | | ||||| || ||||| | || | || | Sbjct 2163721 GATGATTCCAAAGCAGTCTGTCGCTTCAGTGTTAAATTTGGTGTCACTCTCAAAAAAAAA 2163780 Query 20624 CAA----------------------CG-CCTGCTAAAACAGGCCAAAAAATTAGGCCTAG 20660 || || ||| | ||| ||| ||| | |||| | | Sbjct 2163781 AAAAAAAAAAAAAAAAAAGCTCTTTCGCCCTTTTGGAACGGGCGAAAGAGCTAGGTATTG 2163840 Query 20661 AAGTGATCGGAGTCAGCTTCCACGTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAA 20720 | || || || ||||||||||||||||| |||||||| | ||| | || | | Sbjct 2163841 ATGTCATTGGTGTCAGCTTCCACGTGGGAAGTGGCTGTACTGATCCTGAGACCTTTGTGC 2163900 Query 20721 AAGCCATAGCTGAGGCCAGGAGAGCTTTTGACTTTGGCACGCTGA--TGGGCTTTGACAT 20778 | ||||| |||| ||| | | | |||||| | || |||||| | || || |||| Sbjct 2163901 AGGCCATCTCTGATGCCCGCTGTGTCTTTGACATGGG--CGCTGAGGTTGGTTTCAACAT 2163958 Query 20779 GTACCTCTTGGATATTGGTGGCGGCTTTCCCGGGATCAATGAGATTGAGCCAACTTTTGA 20838 ||| || | || |||||||| |||||||| || | | || | ||| | ||||| Sbjct 2163959 GTATCTGCTTGAAATTGGTGGTGGCTTTCCTGGATCCGAGGATGTAAAGCTTAAATTTGA 2164018 Query 20839 GGACATTGCAGAAGTCATTAACGCGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACCT 20898 || || | | || || ||| | || |||| | | |||||||| || | Sbjct 2164019 AGAGATCACCAATGTAATCAACCCAGCACTGGACAAGTATTTTCCATCAGACTCTGGAGC 2164078 Query 20899 GACAATTATTGGTGAACCTGGCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAAC 20958 || ||| || | ||| |||||||| ||||| | | | || || | || | || || | Sbjct 2164079 GAGAATCATAGCTGAGCCTGGCAGATACTATGTTGCATCAGCTTTCACGCTCGCAGTTAA 2164138 Query 20959 TGTGATTGCTAAAAA--GTGTGTTGAAG--ACA-----CTCCTGGAGATAAAAAG----- 21004 | | ||||| ||||| ||| || ||| ||| | ||| || || || Sbjct 2164139 TATCATTGCCAAAAAACTTGTATTAAAGGAACAGACAGGTTCTGATGACGAAGAGGAGTC 2164198 Query 21005 -------------TTTATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCAT 21051 ||||||||||| || || ||||| || ||||| || ||||| | Sbjct 2164199 AAGTGAATGGACATTTATGTATTACGTGAACGATGGAGTATATGGGTCATTCAACTG--T 2164256 Query 21052 ATTATTTA--ACCATGCTCGTCCTATGCCTATGCTGCTTAA-AGA---AAAACGCCTTGA 21105 || |||| | ||||| | | |||| | |||| || ||| ||| | || Sbjct 2164257 ATCCTTTAGGATCATGCACACGTGAAGCCTCTTCTGCAGAAGAGACCCAAATC----AGA 2164312 Query 21106 AGACAAAGACTATGTTTCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGT 21165 || || | ||| || ||||| ||||| || | ||| || ||| | || ||||||| Sbjct 2164313 TGAGAAGTATTATTCATCCAGCATCTGGGGACCGACCTGTGACGGCCTGGACCGCATTGT 2164372 Query 21166 TAAGCGGTGTGAACTGCCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGG 21225 | |||| ||| | ||||| ||| | || ||||| || ||| | | ||||| |||||||| Sbjct 2164373 TGAGCGCTGTAACCTGCCCGAGATGCATGTGGGTGATTGGATGCTCTTTGAGAACATGGG 2164432 Query 21226 CGCTTACAGCTTGGTCAGCT-CTTCAACCTTTAACGGCTTCC 21266 | ||||| || | ||| |||| ||||| || || |||| Sbjct 2164433 TGATTACA-CTGTTGCTGCTGCTTCTACCTTCAATGGATTCC 2164473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462801429688080