Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq123318 159 7e-34 seq123338 149 1e-30 seq123197 138 2e-27 seq123326 123 5e-23 seq123520 113 9e-20 seq123262 113 9e-20 seq77427 113 9e-20 seq123218 100 6e-16 seq121894 98.7 2e-15 seq123453 96.9 7e-15 >seq123318 Length=9803767 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| || || ||||| || ||||||||||| || |||||||| || || || ||||| Sbjct 4075453 ACCTCCCCTTAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 4075394 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || ||||| || ||||| || |||||||| || || || || ||||| || Sbjct 4075393 CAGGGTGCGGCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 4075334 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || || || ||||| ||||| || || || || || || || ||| | || || || Sbjct 4075333 GATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 4075274 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| ||||| ||||| || || |||||||| Sbjct 4075273 CTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4075226 >seq123338 Length=16093809 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||| ||| || || | |||||| || || |||||||| || || ||||||| Sbjct 10050788 TACCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAG 10050729 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| || || || || |||||||| || || || || || || | Sbjct 10050728 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGG 10050669 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||| || ||||| || || || || || || || ||| | || || | Sbjct 10050668 GAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCA 10050609 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | |||| || || |||||||| |||| || || || || ||||||||| Sbjct 10050608 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATT 10050559 >seq123197 Length=3943935 Score = 138 bits (152), Expect = 2e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||| || ||||| || || || || || || || ||||| | | | | || ||||| Sbjct 831055 ACTAGATGAAGAGTGGACTCCTTTTGCATGTTGTAGTCAGACAAAGTACATCCATCTTCC 831114 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 ||||| ||||| |||||||| ||||||| || || ||||| |||||||||||||| || Sbjct 831115 AGTTGCTTTCCCGCAAAGATCAGTCTTTTCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 831174 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| || ||||||||||| | ||||| || || || || | ||| || ||||| Sbjct 831175 ATCTTGGCCTTTACATTTTCTACTGTATCCGAGGGCTCAACCTCGAGAGTGATGGTCTTC 831234 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||| ||||| || || |||||||| Sbjct 831235 CCCGTCCGGGTCTTCACGAAAATCTGCAT 831263 >seq123326 Length=4138734 Score = 123 bits (136), Expect = 5e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| ||||| || ||||||||||| |||||||| || || ||||| ||||||||| Sbjct 3575536 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 3575595 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 ||||| || ||||| || ||||||||||| | ||||| || || || | | ||| Sbjct 3575596 TTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCCACCTTGACAGTG 3575655 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| |||||| ||||| | || |||||||| Sbjct 3575656 ATGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCAT 3575693 >seq123520 Length=5783885 Score = 113 bits (124), Expect = 9e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||||| |||||||||||| || || || || || ||||||||||| || || ||| Sbjct 310160 TGGTGGTACTTTATATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 310219 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || || || || || |||| | ||||| |||||||| | ||| |||||||| || Sbjct 310220 AAGAAAAACAACCAAGTCTCTTTTCTTCACGTGTATCATCACTGTACCATGTTTACGTTG 310279 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 | ||| | || ||||| ||| |||| ||||| || Sbjct 310280 TGGTGGATTGGAATTAAGTGGGTTGCAGGAGGACA 310314 >seq123262 Length=1326122 Score = 113 bits (124), Expect = 9e-20 Identities = 151/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||| || ||||| || || || || || || || ||||| | | | || |||| Sbjct 348138 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTTC 348079 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 ||||| || ||||||||||| ||||| | || || ||||| |||| |||||||| || Sbjct 348078 AGTTGCTTGCCAGCAAAGATCAGTCT--GCTGGTCAGGAGGAATTCTTTCCTTATTCTGG 348021 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| || ||||||||||| || ||||| || || || || | ||| || | || Sbjct 348020 ATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCAACCTCGAGAGTGATGATGTTC 347961 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| ||| ||||| || || |||||||| Sbjct 347960 CCTATCAGAGTCTTCACGAAAATCTGCAT 347932 >seq77427 Length=594 Score = 113 bits (124), Expect = 9e-20 Identities = 151/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||| || ||||| || || || || || || || ||||| | | | || |||| Sbjct 178 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTTC 237 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 ||||| || ||||||||||| ||||| | || || ||||| |||| |||||||| || Sbjct 238 AGTTGCTTGCCAGCAAAGATCAGTCT--GCTGGTCAGGAGGAATTCTTTCCTTATTCTGG 295 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| || ||||||||||| || ||||| || || || || | ||| || | || Sbjct 296 ATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCAACCTCGAGAGTGATGATGTTC 355 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| ||| ||||| || || |||||||| Sbjct 356 CCTATCAGAGTCTTCACGAAAATCTGCAT 384 >seq123218 Length=3948948 Score = 100 bits (110), Expect = 6e-16 Identities = 117/157 (75%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || |||| ||||| || ||||||||||| ||||||| || || ||||| ||||||||| Sbjct 2102254 CCATCTTTCAGTTGCTTGCCAGCAAAGATCAGTCTTTTCTGGTCAGGAGGAATTCCTTCC 2102313 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 ||||| || | ||| | ||||||||||| || ||||| || || || | | ||| Sbjct 2102314 TTATCCTGGACCTTGACCTTTACATTTTCTATGGTATCCGAGGGCTCGACCT-GAGAGTG 2102372 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCA 82809 || ||||| || ||| |||| || || ||||||| Sbjct 2102373 ATGGTCTTCCCCATCAGTGTCTCCACGAAAATCTGCA 2102409 >seq121894 Length=21300 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 82677 AAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACA 82736 ||||| |||||||| || || ||||| |||||||| ||||| || ||||| || |||||| Sbjct 20626 AAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCTTTATCCTGGATCTTGGCCTTTACA 20685 Query 82737 TTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTT 82796 ||||| || ||||| || || || || | ||| || | || ||| ||| ||||| Sbjct 20686 TTTTCTATTGTATCTGAGGGCTCAACCTCGAGAGTGATGATGTTCCCTATCAGAGTCTTC 20745 Query 82797 ACAAATATCTGCAT 82810 || || |||||||| Sbjct 20746 ACGAAAATCTGCAT 20759 >seq123453 Length=12721753 Score = 96.9 bits (106), Expect = 7e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| ||||| |||| || ||||||||||| || ||| ||| || || || |||| Sbjct 4289831 TACCTCCCCTCAAGTGCAGGACCAAGTGCAGAGTGGACTCT--CTGGATGTTGTATTCAG 4289774 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| || | ||| || |||||| | || || | || ||| | Sbjct 4289773 ACAGGGTGCACCCATCTTC-AGCTCTTTCCCTGCAAAGGTCAGCCTCCGCTGGTCTAGGT 4289715 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || || ||||||||||| || || ||||| || || | |||| | || || | Sbjct 4289714 GGATGCCCTCTTTGTCTTGAATCTTGGCCTTGACATTCTCGATGGGATCACTGGGCTCCA 4289655 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| | | ||||| ||| | ||||| | || |||||||| Sbjct 4289654 CCTCCAGGGGGTTGGTCTT-ATGGTCTAGGTCTTCATGAAGATCTGCAT 4289607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980211581558109