Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq123338 140 3e-28 seq123318 125 7e-24 seq123040 118 1e-21 seq123197 86.0 6e-12 >seq123338 Length=16093809 Score = 140 bits (154), Expect = 3e-28 Identities = 152/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 10050757 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 10050699 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || || ||||||||||| || |||||| || Sbjct 10050698 CTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCT 10050639 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 10050638 TCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 10050579 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| ||||| |||||||| Sbjct 10050578 TTTTCACGAAGATCTGCAT 10050560 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 10050985 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 10050927 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| |||||||||||| || ||||| ||||| || |||||| || Sbjct 10050926 CGGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATCTTGGCCT 10050867 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 10050866 TCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 10050807 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 10050806 TCTTCACGAAGATCTGCAT 10050788 >seq123318 Length=9803767 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || || ||| | | | || || ||||| || || Sbjct 4075422 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGTTTCCC 4075364 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || |||||||| || ||||| |||||| ||| Sbjct 4075363 GGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTT 4075304 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| |||||||||| || | ||||| ||| |||||||||| || Sbjct 4075303 GACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGT 4075244 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 4075243 CTTCACGAAGATCTGCAT 4075226 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| || || ||| | | | || || ||||| || || Sbjct 4075194 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGTTTCCC 4075136 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || ||||||||||| || || ||||| ||| Sbjct 4075135 GGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCTTGTATCTTCCCCTT 4075076 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| |||||||||| || | |||| |||||| || || || || Sbjct 4075075 GACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTTTTACCAGTGAGGGT 4075016 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 4075015 CTTCACAAAGATCTGCAT 4074998 >seq123040 Length=253963 Score = 118 bits (130), Expect = 1e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||||||||| || | ||||||| ||||||||| || || ||||| ||||| Sbjct 221153 TCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTA 221094 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | ||| | ||||| |||||||||| || | ||||| | Sbjct 221093 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCCCTGGGCTCCACCTCCAGGGTGATG 221034 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||||||||| || || ||||| |||||||| Sbjct 221033 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 220999 >seq123197 Length=3943935 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| || || || ||||| || || || | || || || ||||| ||| Sbjct 831067 GTGGACTCCTTTTGCATGTTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTTCCC 831126 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || || | | |||||| ||||| || |||||||| || |||||| ||| Sbjct 831127 GCAAAGATCAGTCTTTTCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTT 831186 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || || || || | |||||| || |||| |||| ||| || || ||| | || Sbjct 831187 ACATTTTCTACTGTATCCGAGGGCTCAACCTCGAGAGTGATGGTCTTCCCCGTCCGGGTC 831246 Query 133644 TTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 831247 TTCACGAAAATCTGCAT 831263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482644722290440