Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq123370 262 5e-65 seq123472 206 3e-48 seq38406 203 4e-47 >seq123370 Length=4461615 Score = 262 bits (290), Expect = 5e-65 Identities = 661/1001 (66%), Gaps = 9/1001 (1%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| |||||| | |||||||| || || | ||| ||| Sbjct 3780477 CCAGGGCTTTATGCCTCAGATGCTCGTCCAAACACTGGATGGCAAAGAGGTCAATGTCCG 3780418 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 ||||| ||||| || |||| ||| ||| || | || | ||| || | || || | Sbjct 3780417 TGTCGAATTTGTTGGCAAACAAGTGGTGCATGTGC---AACAGCCAGTTCAAGTCACCAG 3780361 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| |||||||| || || ||||| ||||||||||||||||| || |||| || | Sbjct 3780360 CTCCGAAAACGCACACAGAGCGAACGTGGACGCCGCTGCACGGCGGGTAGGGGGCGCCCT 3780301 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | || || || || |||| ||||| ||||| ||||| | || || |||||||| | Sbjct 3780300 TGGAAACGTCTCCTTCAAAGTACTGCCATTTAACAAACCTGGCAATCGCTTGCATGTCAG 3780241 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | ||||| ||||| || | | | || | || || || | || | ||||| | || Sbjct 3780240 ACGTGTCATACTTATAGCTTAAGGACAATGACCCTGGGACTTCGGGGATCCTCTGAATAG 3780181 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | |||||||| || || || || || | ||||||||| |||| | Sbjct 3780180 TGGCCCAGAGATACTCGTCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGTA 3780121 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 ||| | | || | ||| || || ||| | || | ||| || || || | Sbjct 3780120 TATTTTGGTTCTGGAGCACGTACTCCACATATTCCCTACTGACCACAAAATAGGCACTGC 3780061 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||||| ||| | | ||| || | |||||| ||| |||| | | Sbjct 3780060 CTGAAAACAGAGGTGTTTCAAGAGGTGGATGTATTTTGTCAGTCCCCATGTTTGTCAGCT 3780001 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTT 162598 |||| | ||||| | | ||| ||||||| | ||||| || | | | | Sbjct 3780000 TTCCATTCACGACTTCATAATGCTTTTTCCACCTTTCTTTCTTATGGGATGGCATTTTCT 3779941 Query 162599 CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGG 162658 | || |||| |||| ||| ||| ||| |||| | || || || || |||| Sbjct 3779940 CTGTTTCTAAGTTGTTCTCGCCCATCAATAGCTTGAGCTTCCTGACAATTTCCAGGTTGG 3779881 Query 162659 TCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTC 162718 | |||| ||||| || | ||||||||||| || | || ||||| | | | Sbjct 3779880 TTTTAATAGGAAAATCCATACCGCAGAGATTTATCAGGTACTTCCAGCCTGCATTCATCT 3779821 Query 162719 CGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGA 162778 ||| || ||||| | ||||| || || ||||| || || ||||| ||||| ||||| | Sbjct 3779820 GGTAGAGGTCCTGCATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGACGCATACACCA 3779761 Query 162779 CGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCC--CATC-A 162835 ||||||||| | | |||||||||||||||| ||| || || | || || || | Sbjct 3779760 CGCTCTCCAGCTGACTGGCGACAAAGACATTACTGAAGCAGGATGCGATGCCAACAGCTG 3779701 Query 162836 CGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAG 162895 | |||| || | || || | ||| ||| ||||| | || || | |||||||| Sbjct 3779700 CAGCCAAAAAGGATTTC---TCTGATTTTGCATCCACGTGAATACAATAGAAATTCTGAG 3779644 Query 162896 GGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAG 162955 | |||||||||||||| | || || | ||| || || || || || ||||| |||| Sbjct 3779643 GCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATAG 3779584 Query 162956 AATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGCGGT 163015 |||| ||||| || || | ||||| || ||| || | |||||| || ||||| | Sbjct 3779583 AATATGCTATTGGAAATCCCGCCTCTTCTTTACTAAGTGGTTCTGTAATATATTTGCGCT 3779524 Query 163016 CCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056 | | | || | ||||| || | |||||||| | |||| Sbjct 3779523 TCTTAATGAAAGAAGCACAATCACCAGTCATGTTTATGTAG 3779483 >seq123472 Length=3018059 Score = 206 bits (228), Expect = 3e-48 Identities = 239/322 (74%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | || || || ||||| || ||||| |||||||| | | Sbjct 1968663 CAAAGAGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGC 1968604 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| | || || |||| |||||| ||||| || || | || || || ||| Sbjct 1968603 ACTTGTAACACGCCTCATCTTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGA 1968544 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || || ||||| | | ||||||||| | ||||||||| ||||| ||||| | Sbjct 1968543 GTCCCAGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCGTGGT 1968484 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 |||||||| | ||| ||||||||| ||||| |||||| || || ||||| || || | Sbjct 1968483 TCTCGCTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAA 1968424 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | |||||||| | | ||| ||||||||||||||||||||||||||||||| | Sbjct 1968423 TCAAAACTTCCTGGGGATTTTTCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGCC 1968364 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||| | || || || ||||| Sbjct 1968363 CTCTTACATCCTGGGTCACCAC 1968342 Score = 104 bits (114), Expect = 3e-17 Identities = 157/223 (70%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 ||||||| ||| ||| || |||||||||| ||||| || | ||| ||||| |||| Sbjct 1971547 ACAGTTTCCCTGTAGTCGGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCCT-- 1971490 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| || | || || ||||| | || || ||||| || |||||||| || || Sbjct 1971489 -TCCCCACCTGTGTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGATGTTGTTCCA 1971431 Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682 || | ||| ||| | | ||||| || || || || || || || ||||| | Sbjct 1971430 TTGGGGTGTGACACGATCTCGGTACTGTTCTCAATCCCTGACCCAAAGACCTTCCAGGAG 1971371 Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 || | ||| ||||| | |||| | ||||||||||| || |||| Sbjct 1971370 ATCATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 1971328 >seq38406 Length=522 Score = 203 bits (224), Expect = 4e-47 Identities = 238/322 (74%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | || || || ||||| || ||||| |||||||| | | Sbjct 16 CAAAGAGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGC 75 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| | || || |||| |||||| ||||| || || | || || || ||| Sbjct 76 ACTTGTAACATGCCTCATCTTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGA 135 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || || ||||| | | ||||||||| | ||||||||| ||||| || || | Sbjct 136 GTCCCAGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGT 195 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 |||||||| | ||| ||||||||| ||||| |||||| || || ||||| || || | Sbjct 196 TCTCGCTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAA 255 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | |||||||| | | ||| ||||||||||||||||||||||||||||||| | Sbjct 256 TCAAAACTTCCTGGGGATTTTTCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGCC 315 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||| | || || || ||||| Sbjct 316 CTCTTACATCCTGGGTCACCAC 337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577503392497600