Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq123197 125 2e-23 seq123318 111 4e-19 seq123338 98.7 2e-15 >seq123197 Length=3943935 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || |||||| | || || || || || ||||| ||| |||||| Sbjct 831239 ACGGGGAAGACCATCACTCTCGAGGTTGAGCCCTCGGATACAGTAGAAAATGTAAAGGCC 831180 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||||||| || ||| ||||||| ||||| || |||||| Sbjct 831179 AAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGAAAAGACTGATCTTTGCGGGAAAG 831120 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||||||||| | |||||| | || |||||| | || || ||||| |||||||| Sbjct 831119 CAACTGGAAGATGGATGTACTTTGTCTGACTACAACATGCAAAAGGAGTCCACTCTTCAT 831060 Query 206374 CTTGTTTTGAGACTTCG 206390 || || ||||||||||| Sbjct 831059 CTAGTGTTGAGACTTCG 831043 Score = 95.1 bits (104), Expect = 3e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || || |||||||| ||||| || || | || ||||||| |||||| Sbjct 831043 CGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGCATGTTGTAGTCAGACAAAGTA 831102 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 | |||||||||||| |||||||| || ||||| || Sbjct 831103 CATCCATCTTCCAGTTGCTTTCCCGCAAAGATCAG 831137 >seq123318 Length=9803767 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || ||||| |||||| |||| ||||| |||| Sbjct 4075001 CAGATCTTTGTGAAGACCCTCACTGGTAAAACCATCACTCTGGAGGTGGAGCCCAGTGAC 4075060 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| |||||||||||||| || || ||| || Sbjct 4075061 ACCATTGAGAATGTCAAGGGGAAGATACAAGAAAAAGAAGGCATCCCCCCAGACCAGCAG 4075120 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| ||||| || ||| |||||||||| | || || | || |||||| || Sbjct 4075121 AGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATC 4075180 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| ||||| ||||| || Sbjct 4075181 CAGAAGGAGTCCACTCTGCACCTGGT 4075206 Score = 86.0 bits (94), Expect = 1e-11 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| |||| ||||| |||||| |||| || ||| Sbjct 4075250 ACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCC 4075309 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| ||||| || || || ||| || || || ||||| ||||| || Sbjct 4075310 AAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAA 4075369 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | || || | || |||||| ||||||||||||| ||||| ||| Sbjct 4075370 CAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCAC 4075429 >seq123338 Length=16093809 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| |||| ||||| |||||| |||| Sbjct 10050575 AAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAAC 10050634 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| ||| || ||| || || || ||||| Sbjct 10050635 GTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTT 10050694 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 10050695 GCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCG 10050754 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 10050755 ACCCTGCACCTGGT 10050768 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| |||||| |||| Sbjct 10050803 AAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAAC 10050862 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| || ||| || || || ||||| Sbjct 10050863 GTGAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCCGACCAGCAGAGGCTCATCTTT 10050922 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 10050923 GCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCG 10050982 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 10050983 ACCCTGCACCTGGT 10050996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179876087651951