Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq123472 282 5e-71 seq38406 273 3e-68 seq123643 165 9e-36 seq123496 150 2e-31 seq123628 143 3e-29 >seq123472 Length=3018059 Score = 282 bits (312), Expect = 5e-71 Identities = 254/319 (80%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||||||||||| || | |||||||||||| || || || | | |||||| ||| Sbjct 1968342 GTGGTGACCCAGGATGTAAGAGGGCTGCTGAACACACCTGCTTCTTTAAGATGCTCTCTG 1968401 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 | | | | ||||| || ||||||| || ||||| ||||||||| | | ||||| Sbjct 1968402 AAAAATCCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAA 1968461 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||||| || | ||| | |||||||||| || |||||||| || || ||||||||| Sbjct 1968462 AACATGATCACCTACAGCGAGAACCACGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAG 1968521 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||||||||| |||||| ||||||||||| || || |||||||||||||| Sbjct 1968522 ATAAACATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTG 1968581 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || |||| ||| ||||| ||||||||||| |||||||| ||||| || ||||| || Sbjct 1968582 GAAGATGAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGA 1968641 Query 171372 GTGGCCTGCCTCACCCTCT 171390 | ||||||||||| |||| Sbjct 1968642 ATAGCCTGCCTCACTCTCT 1968660 Score = 188 bits (208), Expect = 8e-43 Identities = 208/277 (75%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || |||||||| || || || || |||||| | | ||| || ||||| || ||||| || Sbjct 1971282 GTACAGCCCACAGTATTCCTTCACTATAAACTATCTGAAGATCACCTAAATATCACTTGC 1971341 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||||||| ||||| | ||| ||| | |||||| | | ||||||| ||||| Sbjct 1971342 TCTGCCAATGCTCGCCCAGCCCCTATGATCTCCTGGAAGGTCTTTGGGTCAGGGATTGAG 1971401 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 ||||||| |||| | | || || | |||||||| || ||||| ||||| | ||||| Sbjct 1971402 AACAGTACCGAGATCGTGTCACACCCCAATGGAACAACATCTGTCACCAGCATCCTCCAG 1971461 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 | ||||||||||||| ||| |||| ||||| || |||||||| ||| |||||||| Sbjct 1971462 ATCAAAGACCCCAAGACACAGGTGGGGAAGGATGTGATCTGCCAGGTGCTACACCTGGGG 1971521 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 | ||| || ||| ||||||||||| | ||| |||| Sbjct 1971522 ACTGTGACCGACTACAGGGAAACTGTGAACAAAGGTA 1971558 >seq38406 Length=522 Score = 273 bits (302), Expect = 3e-68 Identities = 252/319 (79%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||||||||||| || | |||||||||||| || || || | | |||||| ||| Sbjct 337 GTGGTGACCCAGGATGTAAGAGGGCTGCTGAACACACCTGCTTCTTTAAGATGCTCTCTG 278 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 | | | | ||||| || ||||||| || ||||| ||||||||| | | ||||| Sbjct 277 AAAAATCCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAA 218 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||||| || | ||| | |||| ||||| || |||||||| || || ||||||||| Sbjct 217 AACATGATCACCTACAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAG 158 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||||||||| |||||| ||||||||||| || || |||||||||||||| Sbjct 157 ATAAACATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTG 98 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || |||| || ||||| ||||||||||| |||||||| ||||| || ||||| || Sbjct 97 GAAGATGAGGCATGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGA 38 Query 171372 GTGGCCTGCCTCACCCTCT 171390 | ||||||||||| |||| Sbjct 37 ATAGCCTGCCTCACTCTCT 19 >seq123643 Length=11888911 Score = 165 bits (182), Expect = 9e-36 Identities = 147/184 (80%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||| | || | ||| || | ||||||||||||||| | |||||||| |||||||| Sbjct 574095 CTTCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAA 574154 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||||||||||| |||||||| |||||| || | |||||| | Sbjct 574155 GGGCACACCCAGGCCCATGTCCCCCGACCGCTGGTACAACTGGCAGGACAACTCCCCATT 574214 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGC 147161 ||||||| |||||||| ||| |||||| || || || |||||| ||||| || | Sbjct 574215 CACCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGCAGATCTGA 574274 Query 147162 GGGG 147165 |||| Sbjct 574275 GGGG 574278 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||||||||| || ||||| || | || || ||||| Sbjct 576479 GCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCTAAATCCCCTTCAGCTCTGTCG 576538 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||||||| | | | || || ||||||| | ||| ||||| || ||||||| Sbjct 576539 GAGAAGCCCAGGCCATCCAAGAAGTCTCGGGACCCATTGGCATCCCAAATTTTCACTCCC 576598 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 |||| ||||| ||||||| || ||||| ||| Sbjct 576599 TTGGAAGAGAGTTCCTTAGCGTTGGTGGATCCC 576631 >seq123496 Length=5777196 Score = 150 bits (166), Expect = 2e-31 Identities = 132/167 (79%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| || ||||| ||||||||| |||| ||||||| Sbjct 4409102 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAAGAGGTGA 4409043 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| ||| || || ||||| |||||||| || |||| Sbjct 4409042 TGCCACAGGCTGAGAACCAC------------GGGCCTGACATCAAGGAGCACGTGAACT 4408995 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 |||||||||| ||||| |||||||| | || |||||||||| ||| Sbjct 4408994 CTCTGGGGGAGAAGCTGAAGACCCTCCGGCTGCGGCTGCGGCGCTGT 4408948 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| | |||||| |||||||| |||||||||||||| || || || ||||||| Sbjct 4406705 AGCTCCAAGAGAGGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 4406646 Query 178522 TAGAAGCTTACATGACAACAAAAATG 178547 ||||| | ||||||||||| || ||| Sbjct 4406645 TAGAAACCTACATGACAACGAAGATG 4406620 >seq123628 Length=7548098 Score = 143 bits (158), Expect = 3e-29 Identities = 215/304 (71%), Gaps = 6/304 (2%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| || || || | ||||| | ||||| | | | |||| Sbjct 1546530 GTACTCCCTGGTGTTCGTGACCGGCCTGCTGGGCAACGTGGTGGTGGTGGTGATACTCAC 1546471 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||||||||| ||||| |||||||||||||||||| |||| ||||||||||| || ||| Sbjct 1546470 AAAGTACAAGCGGCTCCGGATCATGACCAACATCTACCTGCTCAACCTGGCCATTTCTGA 1546411 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 | |||| | | ||||| || || || |||||||||| | || ||||| |||| Sbjct 1546410 CGTGCTCTTCCTATTCACACTGCCATTCTGGATTCACT--ATGTTAGGTGGAACGAGTGG 1546353 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||| | ||||| |||||||||||| | || || | || ||| |||| Sbjct 1546352 GTG----TTTGGCCACCGCATGTGTAAGTTGCTCTCCGGGCTCTATTACATGGGCTTGTA 1546297 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 ||| || || | || |||||||| ||||| | ||| |||||||||| | || |||| Sbjct 1546296 CAGTGAGATCTTTTTCATCATCCTCTTGACCATAGACCGGTATCTTGCCATCGTCCACGC 1546237 Query 8910 GGTG 8913 ||| Sbjct 1546236 CGTG 1546233 Score = 118 bits (130), Expect = 1e-21 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| || |||||||| ||||||| |||| |||||||| Sbjct 1641597 GTACTCGGTGGTGTTTGTCATTGGCCTGATTGGCAACATCCTGGTGGTCCTGGTCCTCAT 1641656 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | ||||||||||||| | |||||||| ||||| ||| ||||||||||| || ||| Sbjct 1641657 GCAATACAAGAGGCTCAAAAGCATGACCAGCATCTACCTCCTCAACCTGGCCATTTCTGA 1641716 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGAT 8762 ||| | | | ||||| || ||||| ||||| Sbjct 1641717 CCTCATCTTCCTCTTCACGCTGCCCTTCTGGAT 1641749 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | ||||| | ||| ||||||||| ||| |||||||| |||||||||| Sbjct 1545817 TGGACCTGGCCATGCTGGTGACAGAGGTGATCGCCTACACGCACTGCTGTGTCAACCCCG 1545758 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 | ||||| || || || || || | ||||| Sbjct 1545757 TGATCTATGCCTTCGTTGGTGAGAGGTTCC 1545728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582551275658400