Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq123394 100 3e-16 seq123338 98.7 1e-15 seq123465 86.0 7e-12 >seq123394 Length=11296440 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| ||| |||||||| ||||| ||| ||| || || || || || Sbjct 5793540 GTGAAAATATAACGAGGGCTCGCAGCATCTTTGCCCCCATGAAGTCGAGTTCCAAACTGA 5793481 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | ||||||| ||||||||||| ||||||||||| ||| Sbjct 5793480 CCAATAGGCTGAAGCAAGTTGATGTTGTTGCTCCCCACAAAGTTCTGAGCCAAGTTCACA 5793421 Query 117425 ATCGT 117429 || || Sbjct 5793420 ATAGT 5793416 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| ||||| || || || ||||||||||| Sbjct 5793540 GTGAAAATATAACGAGGGCTCGCAGCATCTTTGCCCCCATGAAGTCGAGTTCCAAACTGA 5793481 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | ||||| ||||||| ||||| || ||||||||||| |||||| Sbjct 5793480 CCAATAGGCTGAAGCAAGTTGATGTTGTTGCTCCCCACAAAGTTCTGAGCCAAGTTCACA 5793421 Query 152149 ATCGT 152153 || || Sbjct 5793420 ATAGT 5793416 >seq123338 Length=16093809 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/126 (79%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCA-GCAAGACGCGTACCGAATTG 117363 ||||| ||||| |||| || |||| |||||||||||| |||| | ||||| || || Sbjct 2615409 GTGAAGATGTATCGAGGACTAGCAGAGTCCTTGCCACCATGCAACCTG-GTACCAAACTG 2615351 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||| | |||| ||| |||||||| || ||| |||||||||||| |||||||| |||| Sbjct 2615350 ACCAATGGGCTGCAAAAGGTTCAGATTATTGCTGCCCACAAAGTTCTGAGCCAAATTGAT 2615291 Query 117424 AATCGT 117429 ||| || Sbjct 2615290 AATGGT 2615285 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | ||||||||||| || || || |||||||| Sbjct 2615409 GTGAAGATGTATCGAGGACTAGCAGAGTCCTTGCCACCATGCAACCTGGTACCAAACTGA 2615350 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | ||||| || || ||| |||||| || |||||||||||||| | | Sbjct 2615349 CCAATGGGCTGCAAAAGGTTCAGATTATTGCTGCCCACAAAGTTCTGAGCCAAATTGATA 2615290 Query 152149 ATCGT 152153 || || Sbjct 2615289 ATGGT 2615285 >seq123465 Length=11796121 Score = 86.0 bits (94), Expect = 7e-12 Identities = 99/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 || |||||||| || | |||||| ||||||| ||||||||||| ||||| || ||||| Sbjct 5862559 TCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 5862500 Query 74832 AACCAAAAGATGG-CACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGC 74890 | ||| || || | | || ||| |||| |||||||||||||| || |||||||| Sbjct 5862499 AGCCAGAATATCGACGCAAAAG-AACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 5862441 Query 74891 GACAAGGCGTT 74901 || | |||| Sbjct 5862440 TACCACACGTT 5862430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546337506273800