Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq123197 150 2e-31 seq123338 140 4e-28 seq82137 140 4e-28 seq123318 136 4e-27 seq123262 127 2e-24 seq77427 127 2e-24 seq123218 120 3e-22 seq123040 118 1e-21 seq123326 95.1 1e-14 seq123618 93.3 5e-14 seq123406 89.7 6e-13 seq123394 82.4 9e-11 >seq123197 Length=3943935 Score = 150 bits (166), Expect = 2e-31 Identities = 169/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| | || || ||||| || ||||| ||||||||| | Sbjct 831263 ATGCAGATTTTCGTGAAGACCCGGACGGGGAAGACCATCACTCTCGAGGTTGAGCCCTCG 831204 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| | | |||| | ||||| || || ||||| ||||| ||||||||||| |||||| Sbjct 831203 GATACAGTAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 831144 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 | | || || ||||| || |||||||| || |||| |||| | | ||||| || Sbjct 831143 AAAAGACTGATCTTTGCGGGAAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAAC 831084 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTG 27631 | |||||||| ||||||||||||||||| ||| | ||||| |||| Sbjct 831083 ATGCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACTTCGTGGTG 831038 >seq123338 Length=16093809 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || || ||||| ||| | || Sbjct 10050788 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 10050847 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || ||||| |||||||| ||||| || |||||| Sbjct 10050848 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCCGACCAG 10050907 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || || || | || || || Sbjct 10050908 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 10050967 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || || || || || ||| | ||||| | ||||| Sbjct 10050968 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTTCGTCTGAGGGGTGG 10051014 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || || || || ||||||||||| || || || ||||| ||| | | Sbjct 10050559 AATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 10050618 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | || ||||||| || || ||||| ||||| || ||||| || ||||| Sbjct 10050619 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCA 10050678 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || ||||| || ||||| || || |||| || || || | || || || Sbjct 10050679 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 10050738 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || || || || || ||| | ||||| | ||||| Sbjct 10050739 CATCCAGAAAGAGTCGACCCTGCACCTGGTCCTCCGTCTGAGGGGTGG 10050786 >seq82137 Length=2930 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | ||||||||||| || || || ||||| ||| | || Sbjct 101 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 160 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || || ||||| ||||| || || ||||||||| Sbjct 161 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 220 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || || || || || |||| || ||||| | ||||| || Sbjct 221 CAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 280 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| || || ||| | || || | ||||| Sbjct 281 ATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 327 >seq123318 Length=9803767 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| || || || || || || ||||| ||||| ||| | | Sbjct 4074997 AATGCAGATCTTTGTGAAGACCCTCACTGGTAAAACCATCACTCTGGAGGTGGAGCCCAG 4075056 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | |||| || || || || || || || || || |||||||| Sbjct 4075057 TGACACCATTGAGAATGTCAAGGGGAAGATACAAGAAAAAGAAGGCATCCCCCCAGACCA 4075116 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || ||||| || || || || || |||| || ||||| | ||||| || Sbjct 4075117 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 4075176 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| || || ||| | || || | ||||| Sbjct 4075177 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 4075224 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | ||||||||||| || || || ||||| ||| | || Sbjct 4075226 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 4075285 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || || ||||| ||||| || || ||||||||| Sbjct 4075286 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 4075345 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || || || || || |||| || ||||| | ||||| || Sbjct 4075346 CAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 4075405 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620 |||| || || |||||||| || | ||| |||| Sbjct 4075406 ATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGCG 4075440 >seq123262 Length=1326122 Score = 127 bits (140), Expect = 2e-24 Identities = 154/209 (74%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || | || || | || ||||| ||||||||| | Sbjct 347932 ATGCAGATTTTCGTGAAGACTCTGATAGGGAACATCATCACTCTCGAGGTTGAGCCCTCA 347991 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | ||||| || || ||| | ||||| |||||||||| |||||| Sbjct 347992 GATACAATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAAGAATTCCTCCTGACCAG 348051 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| || || |||||||| |||||||| | |||| | ||| | | ||||| || Sbjct 348052 CAGA--CTGATCTTTGCTGGCAAGCAACTGAAAGATGGACATACTTTGTCTGACTACAAC 348109 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | |||||||| ||||||||||||||||| Sbjct 348110 ATTCAAAAGGAGTCCACTCTTCATCTAGT 348138 >seq77427 Length=594 Score = 127 bits (140), Expect = 2e-24 Identities = 154/209 (74%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || | || || | || ||||| ||||||||| | Sbjct 384 ATGCAGATTTTCGTGAAGACTCTGATAGGGAACATCATCACTCTCGAGGTTGAGCCCTCA 325 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | ||||| || || ||| | ||||| |||||||||| |||||| Sbjct 324 GATACAATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAAGAATTCCTCCTGACCAG 265 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| || || |||||||| |||||||| | |||| | ||| | | ||||| || Sbjct 264 CAGA--CTGATCTTTGCTGGCAAGCAACTGAAAGATGGACATACTTTGTCTGACTACAAC 207 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | |||||||| ||||||||||||||||| Sbjct 206 ATTCAAAAGGAGTCCACTCTTCATCTAGT 178 >seq123218 Length=3948948 Score = 120 bits (132), Expect = 3e-22 Identities = 163/226 (72%), Gaps = 5/226 (2%) Strand=Plus/Minus Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466 |||| || || || |||| || | || ||||| || ||||| |||| ||| | | Sbjct 2102409 TGCAGATTTTCGTGGAGACACTGATGGGGAAGACCATCACTCTC-AGGTCGAGCCCTCGG 2102351 Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526 ||| ||| | |||| | |||| || | ||||| ||||| ||||||||||| |||||| Sbjct 2102350 ATACCATAGAAAATGTAAAGGTCAAGGTCCAGGATAAGGAAGGAATTCCTCCTGACCAGA 2102291 Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATG 27586 | | || || |||||||| |||||||| | |||| |||| | ||||| || Sbjct 2102290 AAAGACTGATCTTTGCTGGCAAGCAACTGAAAGATGGATGTACTTT----GACTACAACA 2102235 Query 27587 TCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| |||||||||||||| || || | ||||| ||||| Sbjct 2102234 TTCAAAAGGAGTCCACTCTTCATCTTGTACTGAGACTTCGTGGTGG 2102189 >seq123040 Length=253963 Score = 118 bits (130), Expect = 1e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || ||||||||||| || || || ||||| ||| | | Sbjct 220998 AATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 221057 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || ||||||| || || ||||| |||||||| ||||| || ||||| Sbjct 221058 GGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCTGACCA 221117 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 |||| | || || ||||| || ||||| || || |||| Sbjct 221118 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATG 221155 >seq123326 Length=4138734 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || | ||||| || || | ||||| || ||| | |||| ||| | Sbjct 3575693 ATGCAGATTTTCATGAAGACCCTGACAGTGAAGACCATCACTGTCAAGGTGGAGCCCTCG 3575634 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| | | |||| | ||||| || || ||||| ||||| ||||||||||| |||||| Sbjct 3575633 GATACAACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 3575574 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 || | || || |||||||| |||||||| || |||| Sbjct 3575573 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATG 3575537 >seq123618 Length=43721425 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||| | ||||| || |||||||| ||| | |||||| ||| | Sbjct 30609585 ATGCAGATCTTTATGAAGACCCTGGTGGGCAAGACCATTGCCCTTGAGCC-----CAG-T 30609638 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || || ||| | || || | ||| || ||||||||||| || || || ||||| Sbjct 30609639 GACACCACTGAGAATGTCAAAGCCATAATCCAAGACAAGGAGGGCATCCCGCCTGACCAA 30609698 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||| ||| ||||||| || | || || ||| ||| | || || |||| || ||| Sbjct 30609699 CAGCATCTGATTTTTGTGGGCACACAGCTGGAGAATGGCTGCACTCTGTCAGAATACAAT 30609758 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 |||| ||||| ||||| || || Sbjct 30609759 ATCCAGAAGGAGTCCACCCTGCA 30609781 >seq123406 Length=2414839 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||| ||| | || Sbjct 2048397 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 2048338 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||||| ||| | || || ||||| || ||||||||||| Sbjct 2048337 GACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGG 2048294 >seq123394 Length=11296440 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 || ||||| ||| | |||||||||||||| || || ||| | ||||| || |||| Sbjct 5793416 ACTATTGTGAACTTGGCTCAGAACTTTGTGGGGAGCAACAACATCAACTTGCTTCAGCCT 5793475 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| || || || || ||||| |||||||||||| | ||||| || Sbjct 5793476 ATTGGTCAGTTTGGAACTCGACTTCATGGGGGCAAAGATGCTGCGAGCCCTCGTTATATT 5793535 Query 32245 TTCAC 32249 ||||| Sbjct 5793536 TTCAC 5793540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569394830812720