Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq123671 248 7e-61 seq123472 192 5e-44 seq123397 190 2e-43 seq38406 183 3e-41 seq123507 113 4e-20 seq123321 104 2e-17 >seq123671 Length=7472308 Score = 248 bits (274), Expect = 7e-61 Identities = 388/552 (70%), Gaps = 5/552 (1%) Strand=Plus/Plus Query 2142 AAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCATG 2201 |||||| || | ||||| || | || |||||| | || || || || || ||||| || Sbjct 47951 AAACTGCATCGTCGCTGTGTCCCAGAACATGGGCTTCGGCAAGAATGGGAACCTGCCCTG 48010 Query 2202 GCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCT---TCTTCCACTGA 2258 ||| | | | |||||||| | |||| |||| |||||| | ||||| || Sbjct 48011 GCCACTGTTCAGGAATGAATTCCAGTATTTCCAAAGAATGACTACAGTCTCTTCAGTAGA 48070 Query 2259 CTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAG 2318 ||||||||||| || |||||||| || ||||| ||||| || |||| || | Sbjct 48071 AGGTAAACAGAATGTGGTGATTATGGGTAGGAAGACCTGGTTCTCCATTCCAGAGAAGAA 48130 Query 2319 CAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACG 2378 | ||||| || ||||||| ||| | |||||||||||| | | || || || ||| Sbjct 48131 TCGACCTTTAAAGGACAGAATTAATATAGTTCTCAGTAGAGAAATCAAGGAACCTCCAAT 48190 Query 2379 TGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGA 2438 || ||||| ||| |||| |||||| | ||| | || | ||| |||| | || ||||| Sbjct 48191 GGGAGCTCATTTTCTTGCCAAAAGTCTGGATGATGCCTTAGAACTTATTAAAGATCCAGA 48250 Query 2439 ATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAG 2498 ||||||| | | || || | | |||||||| | || || || ||||| ||| || | Sbjct 48251 ATTAAAAAATAAAGTAGACATGGTTTGGATAGTGGGAGGCAGTTCTGTTTATAAGAAAGC 48310 Query 2499 CAT-TACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAAT 2557 ||| ||||| | || | | || ||| | |||||||| ||||| |||||||| Sbjct 48311 CATGAACAAG-CCAGGCCATGTTAGACTATTTGTGACAAGGATCATGCAAGAATTTGAAA 48369 Query 2558 GTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAG 2617 ||||| ||| |||||||||||| || || ||||| |||| ||| | |||| ||||| Sbjct 48370 GTGATGCATTTTTCCCAGAAATTGATTTTGAAAAATATAAACTTCTTCCAGAATATCCAG 48429 Query 2618 GTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaa 2677 ||||||| | | || ||||| ||||| || |||| ||||||| ||| ||||||||| Sbjct 48430 GTGTTCCTTTGGATGTCCAAGAGGAAAAAGGCATTAAGTACAAATGTGAAGTATATGAAA 48489 Query 2678 aaaaaaCATAAT 2689 | || | |||| Sbjct 48490 AGAACAATTAAT 48501 Score = 152 bits (168), Expect = 4e-32 Identities = 290/424 (68%), Gaps = 5/424 (1%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || | ||||| || | || |||| ||||| || || || || ||||| Sbjct 344820 CTAAACTGCATCGTCGCTGTGTCCCAGAACATGGACATTGTCAAGAACGGGAACCTGCCC 344879 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCT---TCTTCCACT 2256 ||| | | || | |||||||| | |||| |||| |||||| | ||||| Sbjct 344880 TGGTCACTGCTCAGGAATGAATTCCAGTATTTCCAAAGAATGACTACAGTCTCTTCAGTA 344939 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||||| || |||||||| || ||||| ||||| || |||| || Sbjct 344940 GAAGGTAAACAGAATGTGGTGATTATGGGTAGGAAGACCTGGTTCTCCATTCCAGAGAAG 344999 Query 2317 AGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCA 2376 | | ||||| || ||||||| ||| | |||||||| ||| | | || || || ||| Sbjct 345000 AATCGACCTTTAAAGGACAGAATTAATATAGTTCTCAGGAGAGAAGTCAAGGAACCTCCA 345059 Query 2377 CGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCA 2436 || ||||| ||| |||| ||| || | ||| | || | ||| |||| || ||| Sbjct 345060 ATGGGAGCTCATTTTCTTGCCAAACGTCTGGATGATGCCTTAGAACTTATTGAAGATCCA 345119 Query 2437 GAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAG 2496 ||||||||| | | || || | | |||||||| | || || || ||||| ||| |||| Sbjct 345120 GAATTAAAAAATAAAGTAGACATGGTTTGGATAGTGGGAGGCAGTTCTGTTTATAAGGAA 345179 Query 2497 AGCAT-TACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGA 2555 ||| ||||| | || | | || ||| | |||||||| ||||| ||||||| Sbjct 345180 GCCATGAACAAG-CCAGGCCATGTTAGACTATTTGTGACAAGGATCATGCAAGAATTTGA 345238 Query 2556 ATGT 2559 | || Sbjct 345239 AAGT 345242 >seq123472 Length=3018059 Score = 192 bits (212), Expect = 5e-44 Identities = 196/256 (77%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334 || || |||||| | ||||| |||||||||||| | || || |||||||||||||||| Sbjct 1968408 CCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAAAACATG 1968467 Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394 ||| | || | ||||||||||||| || ||||| || ||||| || || || ||| Sbjct 1968468 ATCACCTACAGCGAGAACCACGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAGATAAAC 1968527 Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454 || || |||| ||||| ||| |||| || ||||||||||| || || ||||| ||| Sbjct 1968528 ATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTGGAAGAT 1968587 Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514 || | ||| |||||||| | ||||| || ||||| ||||| ||||| |||||||||| Sbjct 1968588 GAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGAATAGCC 1968647 Query 1515 TGTCTAACCCTTTTTG 1530 || || || || |||| Sbjct 1968648 TGCCTCACTCTCTTTG 1968663 >seq123397 Length=8552932 Score = 190 bits (210), Expect = 2e-43 Identities = 376/555 (68%), Gaps = 25/555 (5%) Strand=Plus/Minus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || | ||||| || | || |||||||| || || || || || ||| Sbjct 8019142 CTAAACTGCATCGTCGCTGTGTCCCAGAACATGGGCATCGGCAAGAACGGGAACCTG--- 8019086 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCT---TCTTCCACT 2256 ||| || || | |||||||| | |||| |||| |||||| | ||||| Sbjct 8019085 --GCCACCGCTCAGGAATGAATTCCAGTATTTCCAAAGAATGACTACAGTCTCTTCAGTA 8019028 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||||| || |||||| | || ||||| ||||| || |||| || Sbjct 8019027 GAAGGTAAACAGAATGTGGTGATTATGCGTAGGAAGACCTGGTTCTCCATTCCAGAGAAG 8018968 Query 2317 AGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCA 2376 | | ||||| || ||||||| ||| | |||||||||||| | || || || || ||| Sbjct 8018967 AATTGACCTTTAAAGGACAGAATTAATATAGTTCTCAGTAGAGAACTCAAGGAACCTCCA 8018908 Query 2377 CGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCA 2436 || ||||| ||| |||| |||||| | ||| | || | ||| |||| || ||| Sbjct 8018907 AAGGGAGCTCATTTTCTTGCCAAAAGTCTGGATGATGCCTTTGAACTTATTGAAGATCCA 8018848 Query 2437 GAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAG 2496 ||||||||| | | || || | | |||| ||| | | ||| |||| Sbjct 8018847 GAATTAAAAAATAAAGTAGACATGGTTTG--------------GATGTCTTTATAAGGAA 8018802 Query 2497 AGCAT-TACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAA-AAATTTG 2554 ||| ||||| | || | | || ||| | |||||||| |||| || |||| Sbjct 8018801 GCCATGAACAAG-CCAGGCCATGTTAGACTATTTGTGACAAGGATCAAGCAAGAATTTTG 8018743 Query 2555 AATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTC 2614 || ||||| | | |||||||||||| || || ||||| |||| ||| | |||| || Sbjct 8018742 AAAGTGATGCGTTTTTCCCAGAAATTGATTTTGAAAAATATAAACTTCTTCCAGAATATC 8018683 Query 2615 CAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATG 2674 |||||||||| | | || || || ||||| || |||| ||||||||||| |||||| Sbjct 8018682 CAGGTGTTCCTTTGGATGTCCAGGAGGAAAAAGGCATTAAGTACAAATTTGAAGTATATG 8018623 Query 2675 aaaaaaaaaCATAAT 2689 |||| || | |||| Sbjct 8018622 AAAAGAACAATTAAT 8018608 >seq38406 Length=522 Score = 183 bits (202), Expect = 3e-41 Identities = 194/256 (76%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334 || || |||||| | ||||| |||||||||||| | || || |||||||||||||||| Sbjct 271 CCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAAAACATG 212 Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394 ||| | || | |||| |||||||| || ||||| || ||||| || || || ||| Sbjct 211 ATCACCTACAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAGATAAAC 152 Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454 || || |||| ||||| ||| |||| || ||||||||||| || || ||||| ||| Sbjct 151 ATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTGGAAGAT 92 Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514 || | || |||||||| | ||||| || ||||| ||||| ||||| |||||||||| Sbjct 91 GAGGCATGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGAATAGCC 32 Query 1515 TGTCTAACCCTTTTTG 1530 || || || || |||| Sbjct 31 TGCCTCACTCTCTTTG 16 >seq123507 Length=10863306 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| |||||||||||||| || || ||||||||| Sbjct 663452 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGCGCATCGTGGCCTTCTTTGAG 663511 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || || || || ||||||||||| |||||||| | | || | |||| || |||| | Sbjct 663512 TTCGGAGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAGC 663571 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 663572 ATCGCCCTGTGGATGACCGA 663591 >seq123321 Length=13647482 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 2462 TTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATTA-CAAGATCTTGCAAACAG 2520 |||||||| | || || || ||||||| |||| ||| | |||| | || | | Sbjct 7753908 TTTGGATAGTGGGAGGCAGTTCTGTCTGCAAGGAATCCATAAACAAGC-CAGGCCATCTT 7753850 Query 2521 ATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAATT 2580 | || ||| | |||||||| ||||| |||||||| ||||||||| || ||| ||||| Sbjct 7753849 AGACTATTTGTGACAAGGATCATGCAAGAATTTGAAAGTGATACATTTTTTCCACAAATT 7753790 Query 2581 AATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAA 2640 || || || |||| || | |||| | |||||||||| |||| || || | Sbjct 7753789 GATTCGGAAAAGTATAAACTTCTCCCAGAATATACAGGTGTTCCTTCTGATGTCCAGTAG 7753730 Query 2641 GAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaaaaaCATAAT 2689 ||||| || |||| ||||||||||| |||||||||| || | |||| Sbjct 7753729 GAAAAAGGCATTAAGTACAAATTTGAAGTATATGAAAAGAACAATTAAT 7753681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413828039023084