Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq123338 185 2e-41 seq123197 176 1e-38 seq123218 165 2e-35 seq123262 147 5e-30 seq77427 147 5e-30 seq123318 145 2e-29 seq82137 143 6e-29 seq123040 132 1e-25 seq123326 122 2e-22 seq123612 104 5e-17 seq121894 104 5e-17 >seq123338 Length=16093809 Score = 185 bits (204), Expect = 2e-41 Identities = 170/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || |||||||| |||||||| ||||| | ||| || | |||||| Sbjct 10050771 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 10050712 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || |||||||| |||| |||||||| ||| Sbjct 10050711 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 10050652 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| |||||||||||| | || ||||| || ||||| ||| Sbjct 10050651 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 10050592 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || || || || || | ||||||||| Sbjct 10050591 TTGCCGGTCAGGGTTTTCACGAAGATCTGCATTTT 10050557 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || |||||||| |||||||| ||||| | ||| || | |||||| Sbjct 10050999 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 10050940 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||| || |||| || ||||| ||| Sbjct 10050939 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCC 10050880 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| |||||||||||| | || ||||| || ||||| ||| Sbjct 10050879 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 10050820 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 10050819 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 10050788 >seq123197 Length=3943935 Score = 176 bits (194), Expect = 1e-38 Identities = 174/225 (77%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||||||||| | || || |||||||||||||| ||||| ||||| || || | | || Sbjct 831042 ACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGCATGTTGTAGTCAGACAAAGT 831101 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||||| ||||| || || ||||| || | || ||||||||||||| ||| Sbjct 831102 ACATCCATCTTCCAGTTGCTTTCCCGCAAAGATCAGTCTTTTCTGGTCAGGAGGAATTCC 831161 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||||||||| || || ||||| | || || ||| ||||||||||| Sbjct 831162 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTACTGTATCCGAGGGCTCAACCTCGAG 831221 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||||| ||||| ||||| | ||||| || || | |||||| || Sbjct 831222 AGTGATGGTCTTCCCCGTCCGGGTCTTCACGAAAATCTGCATCTT 831266 >seq123218 Length=3948948 Score = 165 bits (182), Expect = 2e-35 Identities = 171/221 (77%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||||||||| || ||||| |||||||||||||| ||||| ||||| || || ||| | Sbjct 2102194 ACGAAGTCTCAGTACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCA--AAG--T 2102249 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| ||| |||||||| || ||||| || | || ||||||||||||| ||| Sbjct 2102250 ACATCCATCTTTCAGTTGCTTGCCAGCAAAGATCAGTCTTTTCTGGTCAGGAGGAATTCC 2102309 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||||| ||| || || ||||| ||||| || ||| || |||| ||| Sbjct 2102310 TTCCTTATCCTGGACCTTGACCTTTACATTTTCTATGGTATCCGAGGGCTCGACCT-GAG 2102368 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCA 211113 |||||| ||||| ||| | || |||| || || | ||||| Sbjct 2102369 AGTGATGGTCTTCCCCATCAGTGTCTCCACGAAAATCTGCA 2102409 >seq123262 Length=1326122 Score = 147 bits (162), Expect = 5e-30 Identities = 168/225 (75%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 || |||||| || || |||||||||||||| ||||| ||||| || || | | || Sbjct 348151 ACAAAGTCTCCACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGT 348092 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 |||||||| ||| |||||||| || ||||| || | || ||||||||||||| || Sbjct 348091 ATGTCCATCTTTCAGTTGCTTGCCAGCAAAGATCAGTC--TGCTGGTCAGGAGGAATTCT 348034 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| | ||||||||| || || ||||| || || || ||| ||||||||||| Sbjct 348033 TTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCAACCTCGAG 347974 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||||| | || || | |||||||| || || | |||||| || Sbjct 347973 AGTGATGATGTTCCCTATCAGAGTCTTCACGAAAATCTGCATCTT 347929 >seq77427 Length=594 Score = 147 bits (162), Expect = 5e-30 Identities = 168/225 (75%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 || |||||| || || |||||||||||||| ||||| ||||| || || | | || Sbjct 165 ACAAAGTCTCCACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGT 224 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 |||||||| ||| |||||||| || ||||| || | || ||||||||||||| || Sbjct 225 ATGTCCATCTTTCAGTTGCTTGCCAGCAAAGATCAGTC--TGCTGGTCAGGAGGAATTCT 282 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| | ||||||||| || || ||||| || || || ||| ||||||||||| Sbjct 283 TTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCAACCTCGAG 342 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||||| | || || | |||||||| || || | |||||| || Sbjct 343 AGTGATGATGTTCCCTATCAGAGTCTTCACGAAAATCTGCATCTT 387 >seq123318 Length=9803767 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||||||||| || |||||||| || || | ||||| | |||||| Sbjct 4075209 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 4075150 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| || || || ||||| || | || ||||| || || | ||||| || || Sbjct 4075149 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCT 4075090 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || || ||||||||| | || ||||| |||||||| || Sbjct 4075089 TGTATCTTCCCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTT 4075030 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || ||||| ||||| ||||| | ||||||| Sbjct 4075029 TTACCAGTGAGGGTCTTCACAAAGATCTGCATT 4074997 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| |||||||||||||| |||||||| || || | ||||| | |||||| Sbjct 4075437 AGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 4075378 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| || || || ||||| || | || ||||| || || | || || ||||| Sbjct 4075377 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 4075318 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| |||||||||||| | || ||||| || ||||| ||| Sbjct 4075317 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 4075258 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | |||||| Sbjct 4075257 TTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4075226 >seq82137 Length=2930 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||||||||| || |||||||| || || | ||||| | |||||| Sbjct 312 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 253 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| || || || ||||| || | || ||||| || || | || || ||||| Sbjct 252 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 193 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| |||||||||||| | || ||||| || ||||| ||| Sbjct 192 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 133 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | |||||| Sbjct 132 TTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 101 >seq123040 Length=253963 Score = 132 bits (146), Expect = 1e-25 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||||||||||||||| || ||||| || | || |||||||| |||| || ||| Sbjct 221156 CCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCCTCC 221097 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 || ||||||||||| |||||||| ||||||||||| | || ||||| || ||| Sbjct 221096 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCCCTGGGCTCCACCTCCAGGGTG 221037 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || || || ||||| || || | ||||||||| Sbjct 221036 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 220996 >seq123326 Length=4138734 Score = 122 bits (134), Expect = 2e-22 Identities = 124/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||||||||| |||||||| || ||||| || | ||| ||||||||||||| |||||| Sbjct 3575535 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTC 3575594 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| ||||||||||| || || ||||| | || || ||| || |||| || ||| Sbjct 3575595 CTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCCACCTTGACAGT 3575654 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| ||||| | || || ||||| | || | |||||| || Sbjct 3575655 GATGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCATCTT 3575696 >seq123612 Length=10710165 Score = 104 bits (114), Expect = 5e-17 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||| || || |||||||| |||||||| ||||| | ||| || |||||| Sbjct 2052258 AGGACCAGGTACAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGTGGCCATCT 2052317 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTT 211014 |||||||||||||| || |||||||| | ||| |||||||| |||| |||| Sbjct 2052318 TCCAGCTGCTTGCCGGCAAAGATAAGCCTTTGCTGGTCAGGGGGAATGCCTT 2052369 >seq121894 Length=21300 Score = 104 bits (114), Expect = 5e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 210981 AAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACG 211040 ||||| || | ||| ||||||||||||| |||||| || ||||||||||| || || Sbjct 20626 AAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCTTTATCCTGGATCTTGGCCTTTACA 20685 Query 211041 TTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTT 211100 ||||| || || || ||| ||||||||||||||||| | || || | |||||||| Sbjct 20686 TTTTCTATTGTATCTGAGGGCTCAACCTCGAGAGTGATGATGTTCCCTATCAGAGTCTTC 20745 Query 211101 ACAAACACCTGCATTTT 211117 || || | |||||| || Sbjct 20746 ACGAAAATCTGCATCTT 20762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1157244589665315