Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq123643 134 1e-26 seq123671 95.1 1e-14 seq123397 95.1 1e-14 seq123635 87.8 1e-12 >seq123643 Length=11888911 Score = 134 bits (148), Expect = 1e-26 Identities = 125/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 29720 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCG 29779 |||| ||| || |||||||| ||||| || | |||||||| ||||| |||||||| || Sbjct 574105 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGCACACCC 574164 Query 29780 AGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAA 29839 || ||||||||||| |||| |||||| | |||||| || | ||| || | |||||| Sbjct 574165 AGGCCCATGTCCCCCGACCGCTGGTACAACTGGCAGGACAACTCCCCATTCACCACGTAG 574224 Query 29840 AACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| || | ||| ||||| || || |||||||||||| Sbjct 574225 AACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGA 574263 >seq123671 Length=7472308 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || | || || ||||| |||| || | ||||| | Sbjct 48200 ATGAGCTCCCATTGGAGGTTCCTTGATTTCTCTACTGAGAACTATATTAATTCTGTCCTT 48141 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||| ||||| |||||||| |||||||| || Sbjct 48140 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCACATT 48081 Query 114382 CTGCTTACCT 114391 ||| |||||| Sbjct 48080 CTGTTTACCT 48071 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || | || || ||||| |||| || | ||||| | Sbjct 345071 ATGAGCTCCCATTGGAGGTTCCTTGACTTCTCTCCTGAGAACTATATTAATTCTGTCCTT 345012 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||| ||||| |||||||| |||||||| || Sbjct 345011 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCACATT 344952 Query 114382 CTGCTTACCT 114391 ||| |||||| Sbjct 344951 CTGTTTACCT 344942 >seq123397 Length=8552932 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || || ||||| |||| || | ||||| | Sbjct 8018896 ATGAGCTCCCTTTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 8018955 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||| ||||| |||| ||| |||||||| || Sbjct 8018956 TAAAGGTCAATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACGCATAATCACCACATT 8019015 Query 114382 CTGCTTACCT 114391 ||| |||||| Sbjct 8019016 CTGTTTACCT 8019025 >seq123635 Length=11332318 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | ||||| | | ||||| |||||| || || Sbjct 6736881 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 6736940 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| |||||||| ||||||| ||||| |||||| Sbjct 6736941 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 6736988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405527451908866