Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq123609 113 4e-20 seq123465 104 2e-17 seq123636 89.7 4e-13 >seq123609 Length=20239142 Score = 113 bits (124), Expect = 4e-20 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 || ||| || ||||| || ||||| || | | ||||| |||||||| ||| || | || Sbjct 16274101 AGTGCTTGTGAAAACTGACATTCAGATAGCCCTTCCTTCTGGGTGCTATGGAAGAGTGGC 16274160 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 |||| | ||||| ||||||| ||| ||| || || || || || ||||| |||||| Sbjct 16274161 TCCTCGTTCTGGCTTGGCAGCAGAACCCTTCATAGATGTAGGAGCTGGTGTCATAGATGA 16274220 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 ||| |||||||| || ||||| ||| ||||||||||||| Sbjct 16274221 AGATTATAGAGGGAATGTTGGTGTTGCCCTGTTTAATTTTGG 16274262 >seq123465 Length=11796121 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||||||||| ||||| || |||||||| | || ||||| | |||| || || Sbjct 5862559 TCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 5862500 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || || |||||||| |||||||| || || ||||| ||| Sbjct 5862499 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 5862440 Query 4692 AC 4693 || Sbjct 5862439 AC 5862438 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| |||||||| || || || |||||||||||||||||||| ||||| || ||| Sbjct 5860821 TCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 5860762 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | || || || | |||||||| Sbjct 5860761 ATTTGGAAGCCATAGAAACAACGGGCCTCGGTAATCTGAACTTC 5860718 >seq123636 Length=25235462 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 4932 ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATA 4991 || || ||||| || || || || ||||||||||||||||| || || | ||||| ||| Sbjct 19806253 ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATA 19806194 Query 4992 AAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 || |||| || || | ||||| || |||||||| || | ||| || | ||||||||| Sbjct 19806193 AAATACTTCTCTTCCGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTTGATAAATCAAC 19806135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426381159412523