Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq123442 132 7e-26 seq123609 105 9e-18 seq123636 87.8 2e-12 seq113950 87.8 2e-12 seq123465 86.0 9e-12 >seq123442 Length=2042734 Score = 132 bits (146), Expect = 7e-26 Identities = 109/133 (82%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 170368 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 170427 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| |||||||| || |||||||| |||||||| ||||| || || | | |||||| Sbjct 170428 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 170487 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 170488 TTTCTTACACCAT 170500 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || |||||||| || ||| Sbjct 189624 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 189683 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || ||||||||||| | || || || || ||||| || || | ||| | ||||||| Sbjct 189684 TAGGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 189743 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 || || || ||||||||| || Sbjct 189744 ATGTGTTGTGGTCTTTCAGCC 189764 Score = 86.0 bits (94), Expect = 9e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 77915 ATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCA 77974 ||||||| |||||||| |||||||| || ||||||| ||||| ||||||||||| || Sbjct 181016 ATATAGCTTCTCAAATTCTTCTCCCCAGACCTCATCCAGACCAGGACATTCATTTGGACA 181075 Query 77975 CATCAATGACCAGTC 77989 |||||| |||||||| Sbjct 181076 CATCAAAGACCAGTC 181090 >seq123609 Length=20239142 Score = 105 bits (116), Expect = 9e-18 Identities = 179/257 (70%), Gaps = 12/257 (5%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| ||||| ||| ||| | | |||||||| |||||| | ||| |||||| Sbjct 16274393 TCCAGTGGAACCAAAGCCTCTTGAAC--CCCTTTCAGTGTCATCTAAAACTTGAACTTCC 16274336 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || || ||| |||| |||| ||| || || || || |||| | | | || Sbjct 16274335 TCTATTTCTGGGTAAAATATCCGTTCATAAATGAGCTGTGCAATTCAAAC-----TTTTG 16274281 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| ||| | ||| || |||| |||||||||||||| Sbjct 16274280 ACTTCAAACTTCTCTTTGCCAAAATTAAACAGGGCAACACCAACATTCCCTCTATAATCT 16274221 Query 46054 TCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGA 46110 |||||||| || || |||| ||||| || || | | || ||||| | |||| Sbjct 16274220 TCATCTATGACACCAGCTCCTACATCTATGAAGGGTTCTGCTGCCAAGCCAGAACGAGGA 16274161 Query 46111 GCTATTCTTCCATAACA 46127 || | ||||||||| || Sbjct 16274160 GCCACTCTTCCATAGCA 16274144 >seq123636 Length=25235462 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 48638 TACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACT 48697 ||| ||||| |||||||| || ||||||| ||| ||||||||||| ||||| || ||| Sbjct 19801510 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGG 19801451 Query 48698 GTATTGGATTGGGAAAATAACAAATC 48723 ||| |||||||| || || ||||||| Sbjct 19801450 GTACTGGATTGGAAAGATGACAAATC 19801425 >seq113950 Length=21241 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCTTGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCCTT 45935 ||||||||| ||||| ||| | || |||||||| ||||| | ||| || |||| Sbjct 9631 TCCAGTGGA-CCAAAACCTCCTGAATCCCTTTCAGTGTTATCTAAAACTTGAACATCCTC 9573 Query 45936 CAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTTAT 45995 | ||||||||| |||| || | | | || || || || ||||||| | || | Sbjct 9572 TATTTCAGGATAAAATATCTATTCACAAAG-AGCTGTGCAGTTTGATCACCCTTTTTGAC 9514 Query 45996 TTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCTTC 46055 |||||| | ||||| ||| ||| || | || ||||| | |||||||||||||| Sbjct 9513 TTCAAACCTTTCTTTGCCAAAATTACATAGTACAACACCAATGCTTCCTCTATAATCTTC 9454 Query 46056 ATCTATTACTCCCCCTCCCACA 46077 |||||| || || |||||||| Sbjct 9453 ATCTATGACACCAGCTCCCACA 9432 >seq123465 Length=11796121 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | ||||| || || || | ||||| || || ||||| || || Sbjct 5864362 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 5864303 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 |||| ||| |||||||||||||| ||||||||||| Sbjct 5864302 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATT 5864268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693553587391840