Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq123318 154 3e-32 seq82137 131 4e-25 seq123338 123 6e-23 seq123197 122 2e-22 seq123218 98.7 2e-15 seq123262 96.9 8e-15 seq77427 96.9 8e-15 seq123040 84.2 5e-11 >seq123318 Length=9803767 Score = 154 bits (170), Expect = 3e-32 Identities = 170/225 (76%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | |||||| || || ||||| ||||| || ||||||||||| || | | || Sbjct 4075218 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 4075159 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || ||||||||| ||||| |||||||||||||| | | ||| ||| Sbjct 4075158 CGGCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCT 4075099 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 || |||||||| || || |||||| |||| | | |||| ||| ||| || || Sbjct 4075098 TCTTTTTCTTGTATCTTCCCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCC 4075042 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||| || ||||| || ||||| |||||||| |||| ||||||| Sbjct 4075041 AGAGTGATGGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCATT 4074997 Score = 123 bits (136), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || ||||| |||||||| ||||||||||| || | | || | |||||| Sbjct 4075437 AGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 4075378 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||||||| ||||| |||||||||||||| | | ||| || || || ||| Sbjct 4075377 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 4075318 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || ||||| |||| | | |||| ||| ||| || || || || || Sbjct 4075317 TGGATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 4075261 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || | ||||||||||||| |||||| Sbjct 4075260 GTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4075226 >seq82137 Length=2930 Score = 131 bits (144), Expect = 4e-25 Identities = 164/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | |||||| || || ||||| ||||| || ||||||||||| || | | || Sbjct 321 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 262 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || ||||||||| ||||| |||||||||||||| | | ||| || Sbjct 261 CGGCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCC 202 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 || || ||||| || || ||||| |||| | | |||| ||| ||| || || Sbjct 201 TCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCC 145 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || | ||||||||||||| |||||| Sbjct 144 AGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 101 >seq123338 Length=16093809 Score = 123 bits (136), Expect = 6e-23 Identities = 165/228 (72%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | |||||| || || || || |||||||| |||||||||||||| | | ||| Sbjct 10050781 CCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGT 10050722 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| |||||||||||||| | | || || Sbjct 10050721 GCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCC 10050662 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 |||||| || || || || || || |||| | | |||| ||| ||| || || Sbjct 10050661 TTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCCACCTC 10050605 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || ||||| || || || |||||||||| ||||||||| Sbjct 10050604 CAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATTTT 10050557 Score = 118 bits (130), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || |||||||| |||||||||||||| | | ||| | |||||| Sbjct 10050999 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 10050940 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| |||||||||||||| | | || || ||||| || Sbjct 10050939 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCC 10050880 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | | |||| ||| ||| || || || || || Sbjct 10050879 TGGATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 10050823 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||||||||||| |||||| Sbjct 10050822 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 10050788 >seq123197 Length=3943935 Score = 122 bits (134), Expect = 2e-22 Identities = 162/223 (73%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || ||||||||||| ||||| ||||| |||||||| || | ||||| | Sbjct 831046 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGCATGTTGTAGTCAGACAAAGTACAT 831105 Query 151947 CCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 |||||||| || ||||| || || ||||| || || | |||||| | | ||||||| Sbjct 831106 CCATCTTCCAGTTGCTTT--CCCGCAAAGATCAGTCTTTTCTGGTCAGGAGGAATTCCTT 831163 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 |||| || || || || || ||| | ||||| | || || ||| || || |||| Sbjct 831164 CCTTATCCTGGATCTTGGCCTTTACATTTTCTACTGTATCCGAGGGCTCAACCTCGAGAG 831223 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || || || ||||| | ||||||||||| | |||||| || Sbjct 831224 TGATGGTCTTCCCCGTCCGGGTCTTCACGAAAATCTGCATCTT 831266 >seq123218 Length=3948948 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/217 (71%), Gaps = 5/217 (2%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| || |||||||||||||| ||||| ||||| |||||||| || ||||| | Sbjct 2102198 AGTCTCAGTACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTC----AAAGTACAT 2102253 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||||| || || || || ||||| || || | |||||| | | ||||||||| Sbjct 2102254 CCATCTTTCAGTTGCTTGCCAGCAAAGATCAGTCTTTTCTGGTCAGGAGGAATTCCTTCC 2102313 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || | || || ||| | |||| | | || || ||| || | ||||| Sbjct 2102314 TTATCCTGGACCTTGACCTTTACATTTTCTATGGTATCCGAGGGCTCGACCT-GAGAGTG 2102372 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCA 152103 || || || ||| | || |||| |||||| | ||||| Sbjct 2102373 ATGGTCTTCCCCATCAGTGTCTCCACGAAAATCTGCA 2102409 >seq123262 Length=1326122 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || ||||||||||| ||||| ||||| |||||||| || | ||||| ||||||| Sbjct 348138 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTTC 348079 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || || || || ||||| || |||||||||| | | |||| |||||| | || Sbjct 348078 AGTTGCTTGCCAGCAAAGATCAG--TCTGCTGGTCAGGAGGAATTCTTTCCTTATTCTGG 348021 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || || ||| | |||| | ||||| ||| || || ||||| || | || Sbjct 348020 ATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCAACCTCGAGAGTGATGATGTTC 347961 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || | |||||||||||||| | |||||| || Sbjct 347960 CCTATCAGAGTCTTCACGAAAATCTGCATCTT 347929 >seq77427 Length=594 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || ||||||||||| ||||| ||||| |||||||| || | ||||| ||||||| Sbjct 178 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTTC 237 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || || || || ||||| || |||||||||| | | |||| |||||| | || Sbjct 238 AGTTGCTTGCCAGCAAAGATCAG--TCTGCTGGTCAGGAGGAATTCTTTCCTTATTCTGG 295 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || || ||| | |||| | ||||| ||| || || ||||| || | || Sbjct 296 ATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCAACCTCGAGAGTGATGATGTTC 355 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || | |||||||||||||| | |||||| || Sbjct 356 CCTATCAGAGTCTTCACGAAAATCTGCATCTT 387 >seq123040 Length=253963 Score = 84.2 bits (92), Expect = 5e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || ||||| ||||| |||||||||||||| | | || || ||| Sbjct 221156 CCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCCTCC 221097 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || || |||| | | |||| ||| || || || || Sbjct 221096 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCCCTGGGCTCCACCTCCAGGGTG 221037 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || ||||| || || ||||||||||||| ||||||||| Sbjct 221036 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 220996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151922162273201