Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq123987 307 1e-78 seq17134 224 1e-53 seq1650 215 5e-51 seq123636 107 2e-18 seq123465 93.3 4e-14 seq123423 86.0 7e-12 seq123640 82.4 8e-11 >seq123987 Length=692 Score = 307 bits (340), Expect = 1e-78 Identities = 234/274 (85%), Gaps = 3/274 (1%) Strand=Plus/Minus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||| ||||| ||||||||||||||||||| ||| ||||||| ||||||||||| ||||| Sbjct 352 TCTCGCTCTGCTGCCCAGGCTGGAGTGCAGCGGCGTGATCTCGGCTCACTGCAAGCTCCG 293 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 ||||||||||||| || |||||||||||||||||||| ||||||||||| ||||||| Sbjct 292 CCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGC 233 Query 8464 AAGCCACCACGCCAAGCTAA-TTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTG 8522 |||||| ||| ||||| |||||||||||| |||||||| ||||||||| || | Sbjct 232 CCGCCACCGTGCCCGGCTAACTTTTTGTATTTTGAGTAGAGATGGGGTTTCACTGTGGTA 173 Query 8523 GCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTG 8582 |||||| ||||||||| ||||||||| | ||||||| | |||||||||||||||||| Sbjct 172 GCCAGGATGGTCTCGATCTCCTGACCCC--GTGATCCGTCCACCTCGGCCTCCCAAAGTG 115 Query 8583 CTGGGATTACAGGCATGAGCCACCGCGCCTGGCC 8616 ||||||| |||||| ||||||||||| || |||| Sbjct 114 CTGGGATGACAGGCGTGAGCCACCGCCCCCGGCC 81 Score = 214 bits (236), Expect = 2e-50 Identities = 176/213 (83%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 ||||||| |||||||| |||| ||||||||||||||| ||||||||||||||||||| | Sbjct 692 CCTCCCGTGTTCAAGCGATTCCCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGGAG 633 Query 8464 AAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGG 8523 ||||||||| || ||| ||||| ||||| |||||||||| | |||| |||||| || Sbjct 632 GAGCCACCACACCCGGCTGATTTT-GTATTGTTAGTAGAGACGGCATTTCTCCATGTGGG 574 Query 8524 CCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGC 8583 ||||||||||||||||| |||| || |||| || ||| |||||||||||||||| Sbjct 573 TCAGGCTGGTCTCGAACTGGCGACCCCAGTGGATCTGCCCGCCCCGGCCTCCCAAAGTGC 514 Query 8584 TGGGATTACAGGCATGAGCCACCGCGCCTGGCC 8616 |||| | |||||| ||||||| || | |||||| Sbjct 513 TGGGGTGACAGGCGTGAGCCATCGTGACTGGCC 481 >seq17134 Length=868 Score = 224 bits (248), Expect = 1e-53 Identities = 200/249 (80%), Gaps = 5/249 (2%) Strand=Plus/Minus Query 8387 GCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTA 8446 |||||| |||||||| ||||||||| ||||||| |||||||||| || |||||| ||||| Sbjct 865 GCTCACCGCAACCTCTGCCTCCCGGTTTCAAGCGATTCTCCTGCATCGGCCTCCTGAGTA 806 Query 8447 GCTGGGATTACAGGCAAAAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGA 8506 || |||||| | |||| || ||||| | ||| |||| ||||||||||| |||| Sbjct 805 GCCGGGATTGCGGGCATGCGCTGCCACGTCTGGCTGATTTC-GTATTTTTAGTGGAGACG 747 Query 8507 GGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCC 8566 ||| ||| |||||| | | ||||||| ||||||||| ||||||| ||||||| || || Sbjct 746 GGGCTTCTCCATGTCGATCGGGCTGGTTTCGAACTCCCGACCTCAGGTGATCCGCCCTCC 687 Query 8567 TCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGCC----CTTTAA 8622 |||||||| |||||||||||| |||||| |||||||||||||| |||| ||| | Sbjct 686 CCGGCCTCCGGAAGTGCTGGGATGACAGGCGTGAGCCACCGCGCCCGGCCTTCATTTTTA 627 Query 8623 AAAGTTTTC 8631 || |||||| Sbjct 626 AATGTTTTC 618 >seq1650 Length=918 Score = 215 bits (238), Expect = 5e-51 Identities = 216/280 (77%), Gaps = 4/280 (1%) Strand=Plus/Minus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTG----CAACC 8399 ||||| ||||| ||||||||||||| ||||| | | | | ||||||| | || Sbjct 748 TCTCAGTCTGTCACCCAGGCTGGAGTACAGTGACACAAACACGGCTCACTCACCACGGCC 689 Query 8400 TCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAG 8459 ||| ||||||||| || || | |||| || ||||||||| || ||||| ||| ||||| Sbjct 688 TCCACCTCCCGGGGTCGAGAGTTCCTCCCGCTTCAGCCTCCTGAATAGCTAGGACTACAG 629 Query 8460 GCAAAAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATG 8519 || | |||| | |||||||||||| ||| | |||||| ||||||||||||| Sbjct 628 GCTTCCAACGCCACACTTGGCTAATTTTTGTGTTTCTTTTAGAGATGGGGTTTCACCATG 569 Query 8520 TTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAA 8579 ||| ||||| | |||| |||||||| |||| ||||||||||| ||||||||||| Sbjct 568 TTGCCCAGGTTCATCTCCAACTCCTGGGCTCAACGCTTCCACCTGCCTTGGCCTCCCAAA 509 Query 8580 GTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGCCCTT 8619 || ||||||||||||||||||||||||| |||||||| || Sbjct 508 GTACTGGGATTACAGGCATGAGCCACCGTGCCTGGCCTTT 469 Score = 154 bits (170), Expect = 2e-32 Identities = 148/191 (77%), Gaps = 13/191 (7%) Strand=Plus/Minus Query 8353 GTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCGGG 8412 || |||||||||||||||||||||| |||| || ||||| ||||||| ||||||| || Sbjct 308 GTCGCCCAGGCTGGAGTGCAGTGGCGTGATTTCGAGTCACTACAACCTCTGCCTCCCAGG 249 Query 8413 TTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCA 8472 || ||| ||||||||||||| | ||| ||||| ||||| || || Sbjct 248 TTGAAGTGATTCTCCTGCCTC------------ACCTGAGATTAGAGGCATGTACCGGCA 201 Query 8473 CGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGG 8532 | | ||||| |||||| ||| ||||||||| |||||||||||||||||||||||||| Sbjct 200 TGTCCGGCTAA-TTTTGTGTTTCTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGG 142 Query 8533 TCTCGAACTCC 8543 ||| ||||||| Sbjct 141 TCTTGAACTCC 131 >seq123636 Length=25235462 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 ||||||| || || || | ||||| ||||| || | ||| ||||| | ||||| ||| | Sbjct 19811101 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 19811042 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 | | ||| ||||| |||||||| ||||| || |||||||| || || ||||| ||||||| Sbjct 19811041 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGG 19810982 Query 23651 CCAC 23654 |||| Sbjct 19810981 CCAC 19810978 >seq123465 Length=11796121 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 || || || ||||| | |||||| ||||| || | || ||||| | ||||||||| || Sbjct 5862559 TCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 5862500 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| ||||| | ||||| || ||||||||||| || || || || || |||||||| Sbjct 5862499 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 5862440 Query 23653 ACAAGACGT 23661 || | |||| Sbjct 5862439 ACCACACGT 5862431 >seq123423 Length=2983393 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 8537 GAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGC 8596 |||||||||| |||| | ||||| || ||||| ||||||||| || |||||||||||| Sbjct 1750708 GAACTCCTGAGCTCAAGCGATCCTCCAGCCTCAGCCTCCCAAGTAGCAGGGATTACAGGC 1750767 Query 8597 ATGAGCCACCGCGCCTGGCC 8616 | | ||||||||||| |||| Sbjct 1750768 ACGGGCCACCGCGCCCGGCC 1750787 >seq123640 Length=14278756 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/86 (83%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 8406 TCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAA 8465 ||||||| |||||| | ||||| |||||||||||| |||||||||||| |||||| | Sbjct 6526451 TCCCGGGCTCAAGCCACTCTCCAGCCTCAGCCTCC-GAGTAGCTGGGACTACAGGTGCAC 6526393 Query 8466 GCCACCACGCCAAGCTAA--TTTTTG 8489 |||||| ||| |||||| |||||| Sbjct 6526392 GCCACCGAGCCCAGCTAAGCTTTTTG 6526367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520650809683400