Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq123318 141 7e-29 seq123338 129 4e-25 seq82137 127 1e-24 seq123197 105 5e-18 seq123040 104 2e-17 >seq123318 Length=9803767 Score = 141 bits (156), Expect = 7e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | | |||||||| || ||| |||||| ||||||||||| || Sbjct 4075228 CATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 4075169 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || |||||||| |||||||||||||||| | |||||| |||| Sbjct 4075168 AGACAGGGTGCGGCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGG 4075109 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||||| ||||| ||||||| ||| | | | |||||||| || || Sbjct 4075108 GGGGATGCCTTCTTTTTCTTGTATCTTCCCCTTGACATTCTCAATGGTGTCACTGGGCTC 4075049 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || || || || |||||||||||||| ||||| ||||| Sbjct 4075048 CACCTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCAT 4074998 Score = 114 bits (126), Expect = 9e-21 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || ||| ||| || ||||||||||| || | || ||| | || ||| Sbjct 4075434 ACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 4075375 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| |||||||||||||||| | |||||| |||| || | || || || || Sbjct 4075374 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 4075315 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | |||| | |||||||| || |||||||||| || || ||||| Sbjct 4075314 ATCTTGGCCTTGAC-GTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 4075256 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||||||||||||| ||||| Sbjct 4075255 GCCGGTCAAGGTCTTCACGAAGATCTGCAT 4075226 >seq123338 Length=16093809 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | | |||||||| || || ||| || |||||||||||||| | Sbjct 10051014 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 10050955 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| ||||||||||| | | |||||| || | || Sbjct 10050954 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 10050895 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| ||||| ||||| |||| | |||||||| || ||||| Sbjct 10050894 ATGCCCTCCTTATCCTGGATCTTGGCCTTCAC-GTTCTCGATGGTGTCACTGGGCTCCAC 10050836 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || || ||||| || || ||||||||||||||||| ||||| Sbjct 10050835 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 10050788 Score = 127 bits (140), Expect = 1e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | | |||||||| || || ||| || |||||||||||||| Sbjct 10050790 CATACCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATC 10050731 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| || |||||||| | | |||||| || | Sbjct 10050730 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGG 10050671 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| ||||| |||| | |||||||| || | Sbjct 10050670 GGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCAC-GTTCTCGATGGTGTCACTGGGCT 10050612 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| || || ||||| || || ||||| ||||||||||| ||||| Sbjct 10050611 CCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 10050560 >seq82137 Length=2930 Score = 127 bits (140), Expect = 1e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | | |||||||| || ||| |||||| ||||||||||| || Sbjct 331 CATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 272 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || |||||||| |||||||||||||||| | |||||| |||| Sbjct 271 AGACAGGGTGCGGCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGG 212 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || || || || ||||| ||| | |||| | |||||||| || | Sbjct 211 GGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGAC-GTTCTCGATGGTGTCACTGGGCT 153 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| || || ||||| || || | ||||||||||||||| ||||| Sbjct 152 CCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 101 >seq123197 Length=3943935 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| ||| ||||||||| |||||||| || | | | Sbjct 831046 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGCATGTTGTAGTCAGACAAAGTACAT 831105 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||| ||||| || |||||||||| | | ||| || | ||| | |||||| Sbjct 831106 CCATCTTCCAGTTGCTTTCCCGCAAAGATCAGTCTTTTCTGGTCAGGAGGAATTCCTTCC 831165 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || ||| || || | || || ||||| | || Sbjct 831166 TTATCCTGGATCTTGGCCTTTACATTTTCTACTGTATCCGAGGGCTCAACCTCGAGAGTG 831225 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| ||||||||||||| || ||||| Sbjct 831226 ATGGTCTTCCCCGTCCGGGTCTTCACGAAAATCTGCAT 831263 >seq123040 Length=253963 Score = 104 bits (114), Expect = 2e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || ||||||||||| ||||||||||| | | |||||| || | || | || ||||| Sbjct 221153 TCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTA 221094 Query 44243 TCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAAT 44301 ||| ||||| ||||| |||| | |||||||| || |||||||||| || || Sbjct 221093 TCCTGGATCTTGGCCTTCAC-GTTCTCGATGGTGTCCCTGGGCTCCACCTCCAGGGTGAT 221035 Query 44302 CGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || || ||||||||||||||||| ||||| Sbjct 221034 GGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 220999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359426924013927