Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq123480 174 2e-38 seq123465 100 4e-16 >seq123480 Length=9600728 Score = 174 bits (192), Expect = 2e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| ||||| || | |||||||||||| |||||||| || ||||| ||||| Sbjct 4247695 GTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTAAGCACATCACACACT 4247636 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||||||||||| ||||| || ||||| |||||||| || ||||| ||||| ||||| Sbjct 4247635 CTGTTGTGTTCCCGCAGCCAAATGGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 4247576 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 | || || || ||||| | || || ||| || || | || || |||||||| | Sbjct 4247575 ACTTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAACATGAGGCGGGTAGATCATTTCG 4247516 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 ||||| |||||||| | ||| |||||||| || || | |||||||| Sbjct 4247515 ACCTGCGTATCTTTGACTGTGGGAGGATACATCTCTCCATTAATCATCT 4247467 Score = 152 bits (168), Expect = 7e-32 Identities = 216/304 (71%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342 |||| | ||| | || || ||||| || || ||||| || |||| ||||||||||| | Sbjct 4249380 GAACACTGAATGAGGTAAAGGGACAGCCTTTCACGTTACTGCAGATGAGAGACTGAATTG 4249321 Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 || | |||| ||| || || || ||||| ||||| ||||| |||||||||||| Sbjct 4249320 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCGAAAGTGCTAGGCTTCCAGTACT 4249261 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 | || ||||| || || |||| || ||||| |||||||| || || || || | Sbjct 4249260 CGGGAGAGCATATAGGATTACCCATAAGTCCTTTCAGGGAGAATGGTGCTCCAGCTTCTA 4249201 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 ||| |||| || |||||||||| ||||||||||| || |||| | ||| || | Sbjct 4249200 CCATGGTCTCCCCAAAGATGGCGTCTGGACGGGGCTTCTCTACCAGAAGGGCGGGATAAA 4249141 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582 ||||| || || | |||||| || || || | || ||||| || ||||| |||| Sbjct 4249140 ACTCCATGGCATCTATGTCTCCATAGAGCGCTTCTAACTCTGCAGCCATTTCCTTCTCTC 4249081 Query 8583 CTGT 8586 |||| Sbjct 4249080 CTGT 4249077 Score = 107 bits (118), Expect = 3e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 ||| |||||||| | ||| |||||||| || || ||||| | ||||| ||| | || Sbjct 4246680 TCTCACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 4246621 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 ||| || || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 4246620 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCAGATTTGTGCCCTGGGGATC 4246561 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807 ||| |||| | || | ||||| ||||| |||||| Sbjct 4246560 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAAC 4246522 >seq123465 Length=11796121 Score = 100 bits (110), Expect = 4e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| || | |||||||| || |||||||||| ||| || || Sbjct 65044 TCACCGATGAGGATGAGGCGGGCCGTCTGGAAGAGCTGCTCGTCACCCCAGGTCGGGTGC 65103 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| | || ||||| | |||||| || | ||||| || |||||||| | | Sbjct 65104 TCAGCCTTCAGCAGGTCACACACGCGGTTGTGCTCACGCAGCCATATCGTGGCGTAGAGC 65163 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 ||||||||||| | ||| ||||| |||| || || || |||| Sbjct 65164 ATGAGCCCAGGAAGCAGCCCAAACACCTCCTGGCCCACGGCCA 65206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715725934946240