Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq123338 159 8e-34 seq123318 149 2e-30 seq82137 145 2e-29 seq123197 136 9e-27 seq123040 122 2e-22 seq123262 120 7e-22 seq77427 120 7e-22 seq121894 105 2e-17 >seq123338 Length=16093809 Score = 159 bits (176), Expect = 8e-34 Identities = 170/222 (77%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | || ||||||||||| || || || || || |||||||| |||| Sbjct 10050552 AGGTCAAAATGC---AGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGG 10050608 Query 177970 TGGAAAGCTCA--GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 ||| ||| || ||||||||||||||||| || ||||| ||||| || ||||| || Sbjct 10050609 TGG--AGCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCAT 10050666 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || || |||||||| | || ||||| || || || ||||| |||||||| | ||||| Sbjct 10050667 TCCCCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCT 10050726 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | ||||| ||| |||| ||||| || || ||||| || || Sbjct 10050727 TTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTGGT 10050768 Score = 149 bits (164), Expect = 2e-30 Identities = 159/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 10050791 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 10050848 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || || || || || || ||||||| Sbjct 10050849 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCCGACCAGC 10050908 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | |||||| | ||||| ||| Sbjct 10050909 AGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 10050968 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 10050969 TCCAGAAAGAGTCGACCCTGCACCTGGT 10050996 >seq123318 Length=9803767 Score = 149 bits (164), Expect = 2e-30 Identities = 159/207 (77%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 4075229 CAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 4075286 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 4075287 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 4075346 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 4075347 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 4075406 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| ||||| || || ||||| |||| Sbjct 4075407 TCCAGAAAGAGTCCACTCTGCA-CTTG 4075432 >seq82137 Length=2930 Score = 145 bits (160), Expect = 2e-29 Identities = 166/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 104 CAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 161 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 162 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGC 221 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 222 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 281 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || | | |||||| Sbjct 282 TCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 322 >seq123197 Length=3943935 Score = 136 bits (150), Expect = 9e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || | || || || || ||||| |||||||| || ||| || Sbjct 831260 CAGATTTTCGTGAAGACCCGGACGGGGAAGACCATCACTCTCGAGGTTGAGCCCTCGGAT 831201 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | || || || || ||||| ||||| || |||||||| ||||| |||||| || Sbjct 831200 ACAGTAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGAAA 831141 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || ||||| || || ||||||||| | ||| | | || || ||| | Sbjct 831140 AGACTGATCTTTGCGGGAAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAACATG 831081 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || ||||| || |||||||| Sbjct 831080 CAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 831046 >seq123040 Length=253963 Score = 122 bits (134), Expect = 2e-22 Identities = 131/171 (77%), Gaps = 7/171 (4%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | || |||||||| || || || || || || |||||||| |||| Sbjct 220991 AGGTCAAAATGC---AGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGG 221047 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| |||||||||||||||| || ||||| ||||| || || || || Sbjct 221048 TGGA--GCCCAGGGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCAT 221105 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || || |||||||| | || ||||| ||||| || ||||| |||||||| Sbjct 221106 TCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGG 221156 >seq123262 Length=1326122 Score = 120 bits (132), Expect = 7e-22 Identities = 156/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| ||||| | ||| || | ||||| |||||||| || |||||| Sbjct 347935 CAGATTTTCGTGAAGACTCTGATAGGGAACATCATCACTCTCGAGGTTGAGCCCTCAGAT 347994 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||| | || ||| |||| ||||| |||||||| Sbjct 347995 ACAATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAAGAATTCCTCCTGACCAGCA- 348053 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || |||||||| ||| | | || || ||| | Sbjct 348054 -GACTGATCTTTGCTGGCAAGCAACTGAAAGATGGACATACTTTGTCTGACTACAACATT 348112 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || ||||| || | |||||| Sbjct 348113 CAAAAGGAGTCCACTCTTCATCTAGTGTGGAGACT 348147 >seq77427 Length=594 Score = 120 bits (132), Expect = 7e-22 Identities = 156/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| ||||| | ||| || | ||||| |||||||| || |||||| Sbjct 381 CAGATTTTCGTGAAGACTCTGATAGGGAACATCATCACTCTCGAGGTTGAGCCCTCAGAT 322 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||| | || ||| |||| ||||| |||||||| Sbjct 321 ACAATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAAGAATTCCTCCTGACCAGCA- 263 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || |||||||| ||| | | || || ||| | Sbjct 262 -GACTGATCTTTGCTGGCAAGCAACTGAAAGATGGACATACTTTGTCTGACTACAACATT 204 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || ||||| || | |||||| Sbjct 203 CAAAAGGAGTCCACTCTTCATCTAGTGTGGAGACT 169 >seq121894 Length=21300 Score = 105 bits (116), Expect = 2e-17 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| ||||| | ||| || | ||||| |||||||| || |||||| Sbjct 20756 CAGATTTTCGTGAAGACTCTGATAGGGAACATCATCACTCTCGAGGTTGAGCCCTCAGAT 20697 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| ||||||||||| ||||| ||||||||| Sbjct 20696 ACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGACCAGCAA 20637 Query 178044 CGACTTATCTT 178054 |||| ||||| Sbjct 20636 AGACTGATCTT 20626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1201750433602614