Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq10 441 5e-119 seq5 286 2e-72 seq23 167 2e-36 seq7 116 3e-21 seq24 86.0 5e-12 >seq10 Length=106310653 Score = 441 bits (488), Expect = 5e-119 Identities = 431/554 (78%), Gaps = 6/554 (1%) Strand=Plus/Minus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||||||||||||||||| | ||| || || || |||| Sbjct 77680572 ATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGGACAT 77680513 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 || |||||| |||||||||| | |||||| ||||| || | ||||| |||||| | Sbjct 77680512 CCAAAGGAACACCTGGATATTCTGGAAGAAGTTTATATTTTTCAAAATCAATTTCTGGGA 77680453 Query 4088 AAAAGGTGTCACATTCAAAGT-CTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCAT 4146 |||| | |||| |||||| | ||||| ||||||| |||||||| ||| ||| || || | Sbjct 77680452 AAAACGCATCACTTTCAAAATTCTTGCTTGATCCTTGTCACAAATAGTCTAACATGGCCT 77680393 Query 4147 GGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACT 4206 || | |||| ||||| ||||| |||||||| ||||| | |||||| |||||||||||| Sbjct 77680392 GGCTTGTTCATGGCTTCCTTATAAACAGAACTGCCTCCCAGTATCCAAACCATGTCTACT 77680333 Query 4207 TTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAA 4266 |||||| ||||||||| | ||| |||||| || |||||||| | ||| | || | | Sbjct 77680332 TTATTTTTTAATTCTGGATCTTCAATAAGTTCAAAGGCATCATCCAGACTTCTGGCAAGA 77680273 Query 4267 AAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCT 4326 |||||||||| | |||| | ||||| ||||| | |||||||| | |||||||||| | Sbjct 77680272 AAATGAGCTCCCTTTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCC 77680213 Query 4327 TTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAA 4386 |||||||| | |||||||| ||||| |||||||| ||||| ||| ||||||||| | | Sbjct 77680212 TTTAAAGGTCAATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACGCATAATCACCACA 77680153 Query 4387 TTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTC 4446 ||||||||| || ||| ||||| ||||||||||||||||||| | || |||||| Sbjct 77680152 TTCTGTTTACCTTCTACTGAAGAGACTGTAGTCATTCTTTGGAAATACTGGAATTCATTC 77680093 Query 4447 ATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCA 4506 | || |||| || ||| || | ||||| ||||||||||| || | ||||| Sbjct 77680092 CTGAGCRGTGGC-----CAGGTTCCCGTTCTTGCCGATGCCCATGTTCTGGGACACAGCG 77680038 Query 4507 ACAATGCAGTTTAG 4520 || ||||||||||| Sbjct 77680037 ACGATGCAGTTTAG 77680024 >seq5 Length=125642736 Score = 286 bits (316), Expect = 2e-72 Identities = 325/432 (75%), Gaps = 7/432 (2%) Strand=Plus/Plus Query 3979 TTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAACA 4038 || || |||||||||||||| ||||||| |||||| || || ||| ||| ||||| Sbjct 43134312 TTTTCTTATACTTCAAATTTATACTTAACGACTTTCTCCTCCTGGACA---GAAGGAACA 43134368 Query 4039 CTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAG-GTGTC 4097 | ||| |||||| | |||||| || || || | |||| ||| ||||||| | || Sbjct 43134369 CCTGGGTATTCTGGGAGAAGTTTATAATTTTCCAAATCATTTTCAAGAAAAAAATGCATC 43134428 Query 4098 ACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCAT 4157 || |||||| |||||| |||| | | |||||| | | |||||| || ||| | |||| Sbjct 43134429 ACTTTCAAATTCTTGCGTGATTATTGCCACAAATAATCTAAGATGGCCTGGCTTGTTCAT 43134488 Query 4158 AGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAA 4217 ||||| ||||| | ||||| | ||| |||| | ||||| |||| |||||||| ||| Sbjct 43134489 GGCTTCCTTATATA--GAACTGCTTCCTGCTATCAA-ACCATATCTAGTTTATTTGTTAA 43134545 Query 4218 TTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCT 4277 | |||| || ||| |||||| ||| |||||||| | ||| || || | ||||||||||| Sbjct 43134546 TGCTGGTTGCTCGATAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCC 43134605 Query 4278 ATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCG 4337 |||||| | ||||| ||||| | |||||| | ||||||||| ||||||||| | Sbjct 43134606 CTGTGGAGGTTCCTTGAGTTCTCTATTGAGAATTATGTTAATTCTGTCTTTTAAAGATTG 43134665 Query 4338 GTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATC 4397 ||||| || ||||| |||||| ||||| ||||||||||||| |||||||||||||| Sbjct 43134666 ATTCTTTTCTGGAATGTTGAACCACGTCTTCCTACCCATAATCACCAAATTCTGTTTATC 43134725 Query 4398 TGGTACAGAAGA 4409 | ||| || || Sbjct 43134726 TTCTACTGATGA 43134737 Score = 217 bits (240), Expect = 1e-51 Identities = 194/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||||||||||||||||| | ||| || || || |||| Sbjct 53295018 ATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGGACAT 53295077 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 |||| |||||| || ||||||| | |||||| || || || ||||| || ||||| Sbjct 53295078 CAGAAGGAACACCTGTATATTCTGGGAGAAGTTTATACTTTTCCGAATCAATTTGTGGAA 53295137 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 ||||||| |||| |||||| |||||||||||||| |||||||| ||| |||||| || | Sbjct 53295138 AAAAGGTATCACTTTCAAATTCTTGCATGATCCTTGTCACAAATAGTCTAAGATGGCCTR 53295197 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 | | | || | ||| || | |||||||| ||||| | |||||| ||||||||||||| Sbjct 53295198 GCTTGTTTATGGATTCCTTGCAGACAGAACTGCCTCCCACTATCCAAACCATGTCTACTT 53295257 Query 4208 TATT 4211 | || Sbjct 53295258 TTTT 53295261 >seq23 Length=53331160 Score = 167 bits (184), Expect = 2e-36 Identities = 184/246 (75%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 26927 AGATAGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCAC 26986 ||| |||| ||| | | || | | |||||||| || ||||| |||||||| || | ||| Sbjct 25076633 AGAAAGCTCTTAAGCCAAATGGCGGACAATGGGGGTGACGCAGGTGCAGCCCACGGCCAC 25076574 Query 26987 TAGCATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAG 27046 ||||||||||| |||| || || | ||||||| | ||| | | | || | || || Sbjct 25076573 CAGCATCTTCTCCAGCCGGAAGGAGTGAGGGCAGTGCTGAGACTCCCTTCGGAGGACCAG 25076514 Query 27047 AATCTCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAAC 27106 |||||||| ||||| | ||| ||||||||||| | ||| || || || |||||||| | Sbjct 25076513 GATCTCTTGCTGGATGGTGACAGAGTTCATGTGATGGTCCACCTTSCCTTCAGCATTGAT 25076454 Query 27107 ACATCCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTC 27166 ||| ||| ||| || ||||| || ||||| ||||||||||| || || || | || || Sbjct 25076453 ACAGCCTGAGTGGCTGCACTTGGCCTCCCAGATCACAGAGGGGTACCTCTCAGGGTCCTC 25076394 Query 27167 ATTGCG 27172 |||||| Sbjct 25076393 ATTGCG 25076388 >seq7 Length=111948857 Score = 116 bits (128), Expect = 3e-21 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | |||||||| || |||||||| || Sbjct 81505744 CTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGG 81505803 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| ||||||||||||| | |||||||||| || Sbjct 81505804 AATGGAGAACCAGGTCTTCCTACCCATAATCACCACATTCTGTTTACCT 81505852 Score = 114 bits (126), Expect = 9e-21 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| ||||||||||||||||||| ||||||||| Sbjct 81502338 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTTTATTTGTTAATTCTGGA 81502397 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 | ||| |||||| ||| || ||| | | ||| || || | ||||||||||| | |||| Sbjct 81502398 TCTTCAATAAGTTCTAAGGCGTCAACCAGACTTTTGGCAAGAAAATGAGCTCCCTTTGGA 81502457 Query 4285 AGCTCC 4290 | ||| Sbjct 81502458 GGTTCC 81502463 Score = 95.1 bits (104), Expect = 9e-15 Identities = 89/112 (79%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||| || | ||||| |||||| ||||| || |||| |||||| |||||||| Sbjct 81499458 AAGTTTATATTTTTCAAAATCAATTTCTGGGAAAAACGTATCACTTTCAAATTCTTGCAT 81499517 Query 4116 GATCCTAGTCACAAACAGTTTAAGAT-CGCATGGATAACTCATAGCTTCTTT 4166 |||||| |||||||| ||| ||| || || ||| | |||| ||||| || Sbjct 81499518 GATCCTTGTCACAAATAGTCTAACATGGGCCTGGCTTGTTCATGGCTTCCTT 81499569 Score = 82.4 bits (90), Expect = 6e-11 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||||||||||||||||| | ||| || || || |||| Sbjct 81494924 ATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGGACAT 81494983 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAA 4057 || |||||| |||||| ||| | |||| Sbjct 81494984 CCAAAGGAACACCTGGATA-TCTGTAAAAA 81495012 >seq24 Length=65017658 Score = 86.0 bits (94), Expect = 5e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||| || || |||||||||||||| || ||||| || || || | ||| |||| Sbjct 36761045 CTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCTAAATCCCCTT 36760986 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 || ||||||| | || || || ||| || || || || ||||| |||||||||| Sbjct 36760985 CAGCTCTGTCGGAGAAGCCCAGGCCATCCAAGAAGTCTCGGGACCCATTGGCATCCCAAA 36760926 Query 102153 TGTGCACGCC 102162 | | ||| || Sbjct 36760925 TTTTCACTCC 36760916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361251059112032