Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq15 140 4e-28 seq11 123 3e-23 seq31 100 3e-16 seq14 100 3e-16 seq13 82.4 9e-11 >seq15 Length=84800079 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 50570449 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 50570508 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 50570509 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 50570568 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 50570569 CTGTTTCTTACACCATA 50570585 Score = 105 bits (116), Expect = 8e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| |||| ||| || ||||||||||| | || || ||||| || || || || || | Sbjct 50594044 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 50594103 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | ||||| | || || ||| | || || | || ||| |||| Sbjct 50594104 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCA 50594163 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 54935 ||| || || || || ||| | |||| |||||||| |||||||||| Sbjct 50594164 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACCTTCATAG 50594211 Score = 96.9 bits (106), Expect = 4e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 50575136 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 50575195 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 ||||||||||||| ||||||| |||||| | ||| || || | || ||||| || | Sbjct 50575196 AATAAATGGTTTCAAAGATCTGCTTATTCAATAATTGGGCCTCTGGACTCTCAAAAGGGT 50575255 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 53565 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| Sbjct 50575256 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 50575313 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||| ||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 50581542 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 50581601 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 50581602 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 50581661 Query 54145 CGGTTCCAAGTATAT 54159 ||||||| ||| || Sbjct 50581662 AGGTTCCAGGTAAAT 50581676 >seq11 Length=110256634 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||||||||| ||||| | ||| |||||||||||||| || ||||| || || || || | Sbjct 90332803 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 90332862 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| |||||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 90332863 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 90332922 Query 24277 C 24277 | Sbjct 90332923 C 90332923 Score = 113 bits (124), Expect = 5e-20 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 90334546 ATCTTTAATGTAAGTGTCAATSAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 90334605 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 ||||| || || |||||||| | |||||||||||||| |||||| Sbjct 90334606 AATTTGGAAGCCATAGAAACAACGGGCCTCGGTAATCTGAACTTCT 90334651 >seq31 Length=39421065 Score = 100 bits (110), Expect = 3e-16 Identities = 152/216 (70%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 21922 ATCTAGAGATTGTACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGC 21981 ||||| | ||| ||||| | | |||||| ||| |||| |||| | || ||||| || Sbjct 658953 ATCTAAAACTTGAACTTCCTCTATTTCTGGGTAAGATATCCGTTCACGAATGAGCTGTGC 658894 Query 21982 TATTCTATCCCCCGTATTTACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCC 22041 ||| ||| ||| | || || | ||| | | ||| ||| ||||| || | || || Sbjct 658893 AATTTGATCACCCTTTTTGACTTCAAACTTCTCTTTGCCAAGATTAAACAGGACAACACC 658834 Query 22042 TATATTTCCCCTATAATCTTCGTCTATTACACCGCCTCCTATATC---AATGCCTTTTAG 22098 | |||||| ||||||||||| ||||||||||| |||||| ||| | | |||| Sbjct 658833 AACATTTCCTCTATAATCTTCATCTATTACACCAGCTCCTACATCTTTGAAGTGTTTTGC 658774 Query 22099 GGACAGACCAGACCTAGGAGCTATTCTACCATAGCA 22134 | || ||||| | |||||| | ||| |||||||| Sbjct 658773 TGCCAAGCCAGAACGAGGAGCCACTCTTCCATAGCA 658738 >seq14 Length=81409030 Score = 100 bits (110), Expect = 3e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || |||| || || | || |||||||| |||||||| ||||| || || | || || Sbjct 60398715 TCATCTCKGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 60398656 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 60398655 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGGC 60398597 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 || ||||| ||||||| || ||||||| ||||||||||||||| ||||| |||||| | Sbjct 60389119 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGGG 60389060 Query 24693 TATTGAATTGGAAAAATAACAAATC 24717 || || |||||||| || ||||||| Sbjct 60389059 TACTGGATTGGAAAGATGACAAATC 60389035 >seq13 Length=84433108 Score = 82.4 bits (90), Expect = 9e-11 Identities = 174/257 (68%), Gaps = 12/257 (5%) Strand=Plus/Minus Query 21883 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 21940 ||| || || ||||| ||| ||| | ||| | ||| ||||| | ||| ||||| Sbjct 33720380 TCCAGTGGAACCAAAGCCTCTTGAACCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCC 33720323 Query 21941 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 22000 | | |||||| ||| |||| |||| | | || ||||| || |||| | | | || Sbjct 33720322 TCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCAAAC-----TTTTG 33720268 Query 22001 ACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 22060 || | ||| | | ||| ||| ||||| || | || || | ||| || ||||||||| Sbjct 33720267 ACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTCCCTCTATAATCT 33720208 Query 22061 TCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGA 22117 || ||||| ||||| |||||| ||| || | || | | || ||||| | |||| Sbjct 33720207 TCATCTATGACACCAGCTCCTACATCTATGAAGGGTTCTGCTGCCAAGCCAGAACGAGGA 33720148 Query 22118 GCTATTCTACCATAGCA 22134 || | ||| |||||||| Sbjct 33720147 GCCACTCTTCCATAGCA 33720131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721362511360