Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq8 84.2 2e-11 >seq8 Length=116941312 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 || ||||| || ||| | || || ||||||| || ||||| || ||| || ||| Sbjct 110779349 AAGATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTTGAGCCC 110779408 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || || || | || | || || || ||||| ||||| | || || Sbjct 110779409 TCGGATACAGTAGAAAATGTAAARGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 110779468 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || |||||||| |||||||| ||||| |||||||||||| ||| || | || ||| Sbjct 110779469 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTAC 110779528 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 || || || ||||| ||||||||||| | ||||| Sbjct 110779529 AACATGCAAAAGGAGTCTACTCTTCATCTAGTGTT 110779563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428335832948960