Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_001901.1 Length=46375 Score E Sequences producing significant alignments: (Bits) Value seq25 116 1e-21 >seq25 Length=44044299 Score = 116 bits (128), Expect = 1e-21 Identities = 128/166 (77%), Gaps = 6/166 (4%) Strand=Plus/Plus Query 6876 TGCATTCTTGATGCCGATGCCCAGCG--AGAAGGTATCAACGCTTCGACGCGTTACCCGA 6933 ||| |||||||||| |||||| |||| | || ||| | | |||| ||||||| Sbjct 10116243 TGCCTTCTTGATGCTGATGCCGAGCGCTAAAATCTATTTGTGTCTGAACGC--TACCCGA 10116300 Query 6934 AAAACTGGG-TGCAAACGGGCGATCCGGCGCGTGAATTCACCATGATTCAGTCAGCCCCG 6992 ||| |||| ||||| |||| ||||||| ||| |||||| ||| |||| |||||| ||| Sbjct 10116301 AAATCTGGTCTGCAA-CGGGGGATCCGGAGCGCAAATTCAACATAATTCTGTCAGCACCG 10116359 Query 6993 CTGATGCTGCTGGCAGACCCGGACGAGTTCGTGTCCGTCAAGCTGG 7038 |||||||||||| | ||||| |||| ||||| |||||| | |||| Sbjct 10116360 CTGATGCTGCTGCCTGACCCTGACGCATTCGTCTCCGTCTAACTGG 10116405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148278343654208