Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq19 91.5 1e-13 seq17 89.7 4e-13 seq8 82.4 6e-11 >seq19 Length=65317831 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || |||||||| || | | || | |||| Sbjct 34141194 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 34141253 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | |||||||||||| Sbjct 34141254 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 34141313 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | | | ||||||| |||||| || | ||||||| | Sbjct 34141314 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 34141373 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||||||||| ||||| || || || |||||||| Sbjct 34141374 TTGCCGGTCAGGGTTTTCACGAAGATCTGCATTTT 34141408 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | ||| |||| ||| || || || ||||| || |||||||| || | Sbjct 34140495 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 34140554 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||| || ||||| ||| |||| || || || || || ||| Sbjct 34140555 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 34140614 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||||||| || | ||| || | | | ||||||| |||||| Sbjct 34140615 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACA 34140674 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | |||||||||| || || || || || ||||| Sbjct 34140675 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 34140721 >seq17 Length=76519027 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || | || |||| ||| || || || ||||| || ||||||||||| | | Sbjct 53720943 CCTCCCCTTAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 53720884 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||| ||||| || ||| |||| || || || || || ||| Sbjct 53720883 AGGGTGCGGCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 53720824 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| || || || || | |||||| | | | ||||||| |||||| Sbjct 53720823 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 53720764 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | ||||||||||| || || || || || ||||| Sbjct 53720763 TCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53720717 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | || || | |||| Sbjct 53719332 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 53719273 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || ||| |||| || || || || || ||| | ||| || || || Sbjct 53719272 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 53719213 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | | | ||||||| |||||| || | ||||||| | Sbjct 53719212 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 53719153 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||||||||| || || || || || ||||| Sbjct 53719152 TTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53719121 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | || || | |||| Sbjct 53719560 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 53719501 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || ||| |||| || || || || || ||| | ||| || || || Sbjct 53719500 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 53719441 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | | | ||||||| |||||| || | ||||||| | Sbjct 53719440 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 53719381 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||||||||| || || || || || ||||| Sbjct 53719380 TTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53719349 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | || || | |||| Sbjct 53719788 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 53719729 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || ||| |||| || || || || || ||| | ||| || || || Sbjct 53719728 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 53719669 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | | | ||||||| |||||| || | ||||||| | Sbjct 53719668 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 53719609 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||||||||| || || || || || ||||| Sbjct 53719608 TTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53719577 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | || || | |||| Sbjct 53720472 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 53720413 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || ||| |||| || || || || || ||| | ||| || || || Sbjct 53720412 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 53720353 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | | | ||||||| |||||| || | ||||||| | Sbjct 53720352 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 53720293 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||||||||| || || || || || ||||| Sbjct 53720292 TTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53720261 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || |||||||| || | || | ||| Sbjct 55474403 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAAAAAGAGTGCGGCCGTCT 55474344 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | |||||||||||| Sbjct 55474343 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 55474284 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | | | ||||||| |||||| || | ||||||| | Sbjct 55474283 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 55474224 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||||||||| ||||| || || || |||||||| Sbjct 55474223 TTGCCGGTCAGGGTTTTCACGAAGATCTGCATTTT 55474189 >seq8 Length=116941312 Score = 82.4 bits (90), Expect = 6e-11 Identities = 168/246 (68%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | || || ||||| | || | ||||| || || || ||||| Sbjct 110779593 TTCCTTTTCTTAGCGACACCACGAAGTCTCAACACTAGATGAAGAGTAGACTCCTTTTGC 110779534 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||| | || || | |||||||| ||| ||||| ||| |||| |||||| Sbjct 110779533 ATGTTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTT 110779474 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGT 18262 || || || || | ||||||||||| || | | || || || | | | || || Sbjct 110779473 TGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCT-TGGCYTTTACATTTTCTACTGT 110779415 Query 18263 GTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTG 18322 || |||||| || | |||||| | || || |||| || || || ||||| || Sbjct 110779414 ATCCGAGGGCTCAACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTG 110779355 Query 18323 CATTTT 18328 ||| || Sbjct 110779354 CATCTT 110779349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343852055840