Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq29 149 8e-31 seq15 134 2e-26 seq11 123 3e-23 seq5 102 1e-16 seq31 95.1 2e-14 seq14 91.5 2e-13 seq13 82.4 1e-10 >seq29 Length=52131593 Score = 149 bits (164), Expect = 8e-31 Identities = 196/274 (72%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 188378 GGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAATCTG 188437 |||||| | || |||||| || |||||||| |||||||||| || ||||| | | Sbjct 23267619 GGATCTTTTGGTCTGATTTYAGCCATGACTTTAAACAGACATAAGCAACCCCTTAGCCCA 23267560 Query 188438 TACCTACTTTGTGGATTTACACTGTTAGAATCTCTAACGCTGGCCTCTGTTGTTACTTTC 188497 | ||| || | || ||||| | |||| ||| |||| || |||||| ||||||||||| Sbjct 23267559 TCCCTGCTCTTTGTATTTATATTGTTGGAAGCTCTGACTGTGGCCTTCATTGTTACTTTC 23267500 Query 188498 TATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTTCTTGCTCTG 188557 ||||| | ||| || | |||| || || |||| |||||| ||| || | Sbjct 23267499 CGTGATGTACATATTGTCCTGCAAGATTGTATACTGACCCATGCAGTAKTTCCTGATTCA 23267440 Query 188558 ACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGGATTGTTTGCT 188617 ||| | |||||| || || |||||||| | ||| ||| ||| | |||| | ||| || Sbjct 23267439 ACTGTGTATACTCTGCAGTCTAAGAGAGACTGCAGCAAATTTGGAGCAGGCCTRTTTTCT 23267380 Query 188618 GCTTTCTGGATTTTAATTTTGTCAGGAGTCTTGA 188651 | ||| |||||||| | ||||||||| |||||| Sbjct 23267379 GGTTTGTGGATTTTGTTCTTGTCAGGAATCTTGA 23267346 >seq15 Length=84800079 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 50570449 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 50570508 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 50570509 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 50570568 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 50570569 CTGTTTCTTACACCATA 50570585 Score = 100 bits (110), Expect = 4e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || |||||||| || | || || || || | ||| || || || || || || | Sbjct 50575136 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 50575195 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||||||||||||||||| |||||| | ||| || || || || ||||| || | Sbjct 50575196 AATAAATGGTTTCAAAGATCTGCTTATTCAATAATTGGGCCTCTGGACTCTCAAAAGGGT 50575255 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62803 | | | |||||||| || || || | ||||| || ||||| || || || | ||| Sbjct 50575256 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 50575313 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||| ||||| |||||||| ||||||||||| || | || || || || | | Sbjct 50581542 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 50581601 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 50581602 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 50581661 Query 63383 CGGTTCCAAGTATATGGC 63400 ||||||| ||| || || Sbjct 50581662 AGGTTCCAGGTAAATAGC 50581679 >seq11 Length=110256634 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| ||||| | ||| || ||||||||||| || ||||| || || || || | Sbjct 90332803 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 90332862 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || |||||||||||||| ||||| ||||||||||||| Sbjct 90332863 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 90332922 Query 33724 C 33724 | Sbjct 90332923 C 90332923 Score = 107 bits (118), Expect = 2e-18 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||| ||||| || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 90334546 ATCTTTAATGTAAGTGTCAATSAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 90334605 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || || || || |||||||| | |||||||||||||| |||||| Sbjct 90334606 AATTTGGAAGCCATAGAAACAACGGGCCTCGGTAATCTGAACTTCT 90334651 >seq5 Length=125642736 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| | | | || | ||||||||||| ||||| |||||| ||| Sbjct 51598814 GTTACTTTCTATGATGTGTATGTTGTCCTGCAAGCTTTCATACTGACTTGTGCAGTATTT 51598873 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| || |||| |||| || |||||||||||||| ||| ||| | |||| Sbjct 51598874 CTTGGTTTGACTGTATATACTTTACAGTCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 51598932 Score = 91.5 bits (100), Expect = 2e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 ||||| || |||||||||||||||||||||| ||||| ||||| || |||||||||||| Sbjct 51587154 TGCTCTTCTATCGAGGACGACTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGCGTGCAC 51587213 Query 188232 ATACGAATGG 188241 || ||||||| Sbjct 51587214 ATCCGAATGG 51587223 >seq31 Length=39421065 Score = 95.1 bits (104), Expect = 2e-14 Identities = 151/216 (70%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 31338 ATCTAGAGATTGTACTTCTTCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGC 31397 ||||| | ||| ||||| || | |||||| ||| |||| |||| | || ||||| || Sbjct 658953 ATCTAAAACTTGAACTTCCTCTATTTCTGGGTAAGATATCCGTTCACGAATGAGCTGTGC 658894 Query 31398 TATTCTATCTCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCC 31457 ||| ||| || | || || | |||| | ||| ||| ||||| || | || || Sbjct 658893 AATTTGATCACCCTTTTTGACTTCAAACTTCTCTTTGCCAAGATTAAACAGGACAACACC 658834 Query 31458 TATGTTTCCCCTATAATCTTCGTCTATTACACCGCCTCCTATATC---AATGCCTTTTAG 31514 | ||||| ||||||||||| ||||||||||| |||||| ||| | | |||| Sbjct 658833 AACATTTCCTCTATAATCTTCATCTATTACACCAGCTCCTACATCTTTGAAGTGTTTTGC 658774 Query 31515 GGACAGACCAGACCTAGGAGCTATTCTACCATAGCA 31550 | || ||||| | |||||| | ||| |||||||| Sbjct 658773 TGCCAAGCCAGAACGAGGAGCCACTCTTCCATAGCA 658738 >seq14 Length=81409030 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 || ||||| ||||||| || ||||||| ||||||||||||||| ||||| |||||| | Sbjct 60389119 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGGG 60389060 Query 34140 TATTGGATTGGGAAAATAACAAATC 34164 || |||||||| || || ||||||| Sbjct 60389059 TACTGGATTGGAAAGATGACAAATC 60389035 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || |||| || || | || || ||||| |||||||| ||||| || || | || || Sbjct 60398715 TCATCTCKGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 60398656 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| || |||||||| Sbjct 60398655 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGGC 60398597 >seq13 Length=84433108 Score = 82.4 bits (90), Expect = 1e-10 Identities = 174/257 (68%), Gaps = 12/257 (5%) Strand=Plus/Minus Query 31299 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 31356 ||| || || ||||| ||| ||| | ||| | ||| ||||| | ||| ||||| Sbjct 33720380 TCCAGTGGAACCAAAGCCTCTTGAACCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCC 33720323 Query 31357 TCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTT 31416 || | |||||| ||| |||| |||| | | || ||||| || |||| | || || Sbjct 33720322 TCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCAAACTT-----TTG 33720268 Query 31417 ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 31476 || | |||| | ||| ||| ||||| || | || || | || || ||||||||| Sbjct 33720267 ACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTCCCTCTATAATCT 33720208 Query 31477 TCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGA 31533 || ||||| ||||| |||||| ||| || | || | | || ||||| | |||| Sbjct 33720207 TCATCTATGACACCAGCTCCTACATCTATGAAGGGTTCTGCTGCCAAGCCAGAACGAGGA 33720148 Query 31534 GCTATTCTACCATAGCA 31550 || | ||| |||||||| Sbjct 33720147 GCCACTCTTCCATAGCA 33720131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817348072960