Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq24 136 3e-27 seq10 105 6e-18 >seq24 Length=65017658 Score = 136 bits (150), Expect = 3e-27 Identities = 128/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||| |||||| ||| ||||||| || || || |||||||||||||| ||||| || | Sbjct 36763416 TCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGG 36763357 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | |||| |||||||| ||||||||||| |||||| Sbjct 36763356 GCACACCCAGGCCCATGTCCCCCGACCGCTGGTACAACTGGCAGGACAACTCCCCATTCA 36763297 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCAT 21151 ||||||| ||||| || | |||| || || ||||| ||||| Sbjct 36763296 CCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCAT 36763254 >seq10 Length=106310653 Score = 105 bits (116), Expect = 6e-18 Identities = 191/276 (69%), Gaps = 10/276 (4%) Strand=Plus/Minus Query 2890 CTCATAAACAGATTTTCCTCCAATAACCCAGACCGTGTTTAATTGTTCTTTTAGTT-TGT 2948 || ||||||||| | ||||| | | ||| ||| ||| || || | ||||| || || Sbjct 77680375 CTTATAAACAGAACTGCCTCCCAGTATCCAAACCATGTCTACTTTATTTTTTAATTCTGG 77680316 Query 2949 ATTGTCTATAGAAATTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCG 3008 || || ||| | | ||| ||||| || || |||| || ||||| || ||||| | | Sbjct 77680315 ATCTTCAATA-AGTTCAAAGGCATCATCCAGACTTCTGGCAAGAAAATGAGCTCCCTTTG 77680257 Query 3009 GTGGTTCACGTAATTCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCT 3068 | ||||| | |||||| || | || ||||||||||||| | | ||| | |||| Sbjct 77680256 GAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCAATTCT 77680197 Query 3069 TTTCAGGGATGGAAAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAA 3128 | || || ||||| ||||| || | | | |||||| |||||||||| || |||| | | Sbjct 77680196 TCTCTGGAATGGAGAACCAGGTCTTCCTACGCATAATCACCACATTCTGTTTACCTTCTA 77680137 Query 3129 CCGATGGCGTAGAC----GTCATTTTCTGAAAATAC 3160 | || | |||| |||||| | || |||||| Sbjct 77680136 CTGAAG----AGACTGTAGTCATTCTTTGGAAATAC 77680105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427775833167360