Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq17 116 4e-21 seq19 95.1 1e-14 >seq17 Length=76519027 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || | ||| |||| || ||||| | || |||||||| || ||||| || || | Sbjct 53720943 CCTCCCCTTAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 53720884 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| |||||||| || ||| ||||||| | ||||| || || || Sbjct 53720883 AGGGTGCGGCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 53720824 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| |||||||| ||| || || | | || | ||||| ||||||||||| Sbjct 53720823 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 53720764 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||||||||||| || || ||||| || ||||| Sbjct 53720763 TCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 53720717 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || || |||| | ||||| |||||||| || Sbjct 53719317 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 53719258 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| || || || ||||| |||||||| ||| || || Sbjct 53719257 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 53719198 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | |||||||||||||| || Sbjct 53719197 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTC 53719138 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 53719137 TTCACGAAGATCTGCAT 53719121 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || || |||| ||||| |||||||| || Sbjct 53719545 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGTTTCCCG 53719486 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| || || || ||||| |||||||| ||| || || Sbjct 53719485 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 53719426 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | |||||||||||||| || Sbjct 53719425 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTC 53719366 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 53719365 TTCACGAAGATCTGCAT 53719349 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || || |||| ||||| |||||||| || Sbjct 53719773 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGTTTCCCG 53719714 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| || || || ||||| |||||||| ||| || || Sbjct 53719713 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 53719654 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | |||||||||||||| || Sbjct 53719653 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTC 53719594 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 53719593 TTCACGAAGATCTGCAT 53719577 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || || |||| | ||||| |||||||| || Sbjct 53720001 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 53719942 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| || || || ||||| |||||||| ||| || || Sbjct 53719941 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 53719882 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | || | |||||||||||||| || Sbjct 53719881 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTCAAGGTC 53719822 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 53719821 TTCACGAAGATCTGCAT 53719805 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || || || |||| | ||||| |||||||| || Sbjct 53720229 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTTCCG 53720170 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| || || || ||||| |||||||| ||| || || Sbjct 53720169 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 53720110 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | |||||||||||||| || Sbjct 53720109 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTC 53720050 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 53720049 TTCACGAAGATCTGCAT 53720033 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || || |||| ||||| |||||||| || Sbjct 53720457 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGTTTCCCG 53720398 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| || || || ||||| |||||||| ||| || || Sbjct 53720397 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 53720338 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | |||||||||||||| || Sbjct 53720337 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTC 53720278 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 53720277 TTCACGAAGATCTGCAT 53720261 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || || |||| ||||| |||||||| || Sbjct 53720685 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGTTTCCCG 53720626 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| || || || ||||| |||||||| ||| || || Sbjct 53720625 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 53720566 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | || | |||||||||||||| || Sbjct 53720565 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTCAAGGTC 53720506 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 53720505 TTCACGAAGATCTGCAT 53720489 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| ||||| | |||| |||||| ||||| || || Sbjct 55474388 GTCGACTCTTTCTGGATGTTGTAATCAAAAAGAGTGCGGCCGTCTTCCAGCTGCTTGCCG 55474329 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| || || || |||||||| || || ||| || || Sbjct 55474328 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 55474269 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | ||||||||||||| ||| Sbjct 55474268 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTT 55474209 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 55474208 TTCACGAAGATCTGCAT 55474192 >seq19 Length=65317831 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| ||||| | |||| ||||| ||||| || || Sbjct 34141209 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 34141268 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| || || || |||||||| || || ||| || || Sbjct 34141269 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 34141328 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | ||||||||||||| ||| Sbjct 34141329 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTT 34141388 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 34141389 TTCACGAAGATCTGCAT 34141405 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| ||||| | |||| ||||| ||||| || || Sbjct 34140753 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 34140812 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| || || || |||||||| || || ||| || || Sbjct 34140813 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 34140872 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | ||||||||||||| || Sbjct 34140873 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 34140932 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 34140933 TTCACGAAGATCTGCATA 34140950 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| ||||| | |||| ||||| ||||| || || Sbjct 34140525 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 34140584 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| || || || |||||||| || || ||| || || Sbjct 34140585 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 34140644 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| |||||||||| || | ||| | ||||||||||||| || Sbjct 34140645 ACGTTCTCGATGGTGTCACTGGGCTCCACATCCAGGGTGATGGTCTTGCCGGTCAGGGTC 34140704 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 34140705 TTCACGAAGATCTGCATA 34140722 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| ||||| | |||| ||||| ||||| || || Sbjct 34140981 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 34141040 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| ||||| || ||||| || || || ||| || || Sbjct 34141041 GCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATCTTGGCCTTC 34141100 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| |||||||||| || | ||| | ||||||||||||| || Sbjct 34141101 ACGTTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 34141160 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 34141161 TTCACGAAAATCTGCATA 34141178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063801574400