Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq8 91.5 1e-13 >seq8 Length=116941312 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42886 CCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAAT 42945 ||||| ||||| ||||| | ||| | ||| ||||||||||| ||||| || ||||| Sbjct 110779575 CCACGAAGTCTCAACACTAGATGAAGAGTAGACTCCTTTTGCATGTTGTAGTCAGACAAA 110779516 Query 42946 GTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACA 43005 |||| | | || |||| ||| ||||| ||||| |||| || || || || | || | Sbjct 110779515 GTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATT 110779456 Query 43006 CCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCT 43065 ||||| || || |||| | || || | | ||||| || | ||| || || Sbjct 110779455 CCTTCCTTATCCTGGATCTTGGCYTTTACATTTTCTACTGTATCCGAGGGCTCAACCTCG 110779396 Query 43066 ACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 | || || || || || || || || ||||| ||||| ||||| || Sbjct 110779395 AGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATCTT 110779349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381369451265856