Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq15 141 1e-28 seq11 123 3e-23 seq14 104 3e-17 seq31 91.5 2e-13 >seq15 Length=84800079 Score = 141 bits (156), Expect = 1e-28 Identities = 113/136 (83%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | | Sbjct 50570449 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 50570508 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | || | Sbjct 50570509 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 50570568 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 50570569 CTGTTTCTTACACCAT 50570584 Score = 98.7 bits (108), Expect = 1e-15 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440 |||| || || ||||| || | | | ||| || ||||| || || || || ||||||| Sbjct 50575136 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 50575195 Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 ||||||||||||| || |||| |||||| | ||| || || || || ||||| || | Sbjct 50575196 AATAAATGGTTTCAAAGATCTGCTTATTCAATAATTGGGCCTCTGGACTCTCAAAAGGGT 50575255 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGG 71552 | | | |||||||| || ||||| | ||||| || ||||| || || || Sbjct 50575256 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGG 50575307 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||| ||||| |||||||| ||||||||||| || | || || || |||| | ||| Sbjct 50581546 ACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 50581605 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || |||||||| ||||| || | ||| |||||| | | || || ||||||| ||| Sbjct 50581606 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGT 50581665 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 50581666 TCCAGGTAAATAGC 50581679 >seq11 Length=110256634 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| ||||| | ||| |||||||||||||| || ||||| || || || || | Sbjct 90332803 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 90332862 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| |||||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 90332863 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 90332922 Query 42207 C 42207 | Sbjct 90332923 C 90332923 Score = 104 bits (114), Expect = 3e-17 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| || || || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 90334546 ATCTTTAATGTAAGTGTCAATSAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 90334605 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || || || || |||||||| | ||||||||||| ||| |||||| Sbjct 90334606 AATTTGGAAGCCATAGAAACAACGGGCCTCGGTAATCTGAACTTCT 90334651 >seq14 Length=81409030 Score = 104 bits (114), Expect = 3e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 ||||||| || || | || |||||||| |||||||| ||||| || || | || || Sbjct 60398715 TCATCTCKGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 60398656 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 ||||| ||||||| ||||| ||||| || ||||| ||||||||||| || |||||||| Sbjct 60398655 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGGC 60398597 >seq31 Length=39421065 Score = 91.5 bits (100), Expect = 2e-13 Identities = 214/318 (67%), Gaps = 9/318 (3%) Strand=Plus/Minus Query 39837 ATCTAGAGATTGTACTTCTTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGC 39896 ||||| | ||| ||||| || | |||||| ||| |||| |||| | || ||||| || Sbjct 658953 ATCTAAAACTTGAACTTCCTCTATTTCTGGGTAAGATATCCGTTCACGAATGAGCTGTGC 658894 Query 39897 TATTCTATCTCCCGTATTTACATTGAAAGTACATTTT-CCATTATTAATAAGAATGACTC 39955 ||| ||| ||| | || || || ||| | | ||| ||| ||||| || | || | Sbjct 658893 AATTTGATCACCCTTTTTGAC-TTCAAACTTCTCTTTGCCAAGATTAAACAGGACAACAC 658835 Query 39956 CTATGTTTCCCCTATAATCTTCGTCTATTACACCGCCTCCTATATC---AATACCTTTTA 40012 | | ||||| ||||||||||| ||||||||||| |||||| ||| | |||| Sbjct 658834 CAACATTTCCTCTATAATCTTCATCTATTACACCAGCTCCTACATCTTTGAAGTGTTTTG 658775 Query 40013 GGGACAGACCAGACCTAGGAGCTATTCTACCATAGCAGAACTTAGGCATGGACATACTAA 40072 | || ||||| | |||||| | ||| |||||||| ||| | || || || Sbjct 658774 CTGCCAAGCCAGAACGAGGAGCCACTCTTCCATAGCACCCAGAAGGAACGGCTATCTGAA 658715 Query 40073 TATCTGTCTTAATTAACTGTCTTTCTCC--CGGAGGGATAGTATAATCGTAAGCGCTATA 40130 | || || || | | | |||||||| ||| || | || ||||| || || || || Sbjct 658714 TGTCAGTTTTCACAAGC--ACTTTCTCCATCGGTGGTACTGTGTAATCATAGGCACTGTA 658657 Query 40131 CAAATCATATCCAGCGGC 40148 || ||||| || |||| Sbjct 658656 CAGGTCATAGCCCACGGC 658639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138931544320