Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq8 165 2e-35 seq19 147 5e-30 seq17 147 5e-30 seq3 127 5e-24 seq1 116 9e-21 seq14 113 1e-19 seq9 104 5e-17 seq13 87.8 4e-12 >seq8 Length=116941312 Score = 165 bits (182), Expect = 2e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| | ||||| || || || || || |||||||| | ||| | || ||||| Sbjct 110779560 ACTAGATGAAGAGTAGACTCCTTTTGCATGTTGTAGTCAGACAAAGTACATCCATCTTCC 110779501 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| || || || || || |||||||| |||||||| |||||||| Sbjct 110779500 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 110779441 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || |||||||||||||| ||||| || || ||||| || || || ||||| Sbjct 110779440 ATCTTGGCYTTTACATTTTCTACTGTATCCGAGGGCTCAACCTCGAGAGTGATGGTCTTC 110779381 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || || || || |||||||| ||| Sbjct 110779380 CCCGTCAGGGTCTTCACGAAAATCTGCATCTTG 110779348 >seq19 Length=65317831 Score = 147 bits (162), Expect = 5e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || |||||||| || || || ||| Sbjct 34141176 ATACCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCA 34141235 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| || || || || ||||| || |||||||| || ||||| Sbjct 34141236 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGG 34141295 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| |||||||| ||||| || || || || || | ||| || || || || Sbjct 34141296 GGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCC 34141355 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || ||||| || || || ||||| || || |||||||||||| Sbjct 34141356 ACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATTTTG 34141409 >seq17 Length=76519027 Score = 147 bits (162), Expect = 5e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || || ||| | ||||| | |||||||| || || || || Sbjct 55474388 GTCGACTCTTTCTGGATGTTGTAATCAAAAAGAGTGCGGCCGTCTTCCAGCTGCTTGCCG 55474329 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || ||||| || || ||||| |||||||| ||||| || || Sbjct 55474328 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 55474269 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || || ||||| || || || ||||| || || || ||| Sbjct 55474268 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTT 55474209 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || || |||||||||||| Sbjct 55474208 TTCACGAAGATCTGCATTTTG 55474188 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/217 (70%), Gaps = 5/217 (2%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 || || ||||| ||||| | || || || || ||||| ||||| || | || | Sbjct 42721474 AGTCTCAGTACAAGATGAAGAGTGGACTCCTTTTGAATGCTATAGACAAA----GTACAT 42721419 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || |||| ||||| | |||||||| || || | | || |||||||| |||||||| Sbjct 42721418 CCATCTTTCAGTTGCCTCCCAGCAAAGATCAGTCYTTTCTGGTCAGGAGGAATTCCTTCC 42721359 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||||||| | ||| | ||||||||||||| |||||| || || |||| || || Sbjct 42721358 TTATCCTGGACCTTGACCTTTACATTTTCTATGGTATCCGAGGGCTCGACCT-GAGAGTG 42721300 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCA 104558 || ||||| || | || || | || | ||||||| Sbjct 42721299 ATGGTCTTCCCCATCAGGGTCTCCACGTAAATCTGCA 42721263 >seq3 Length=127865068 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| | || || || || ||||| || |||||||| | ||| || |||| Sbjct 21608349 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTTG 21608290 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| || || || || || |||||||| |||| ||| |||| ||| Sbjct 21608289 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCTTTCCTTATTCTGG 21608230 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| ||||| || || ||||| || || || | || Sbjct 21608229 ATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCGACCTCGAGAGTGATGATGTTC 21608170 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || | || || || || || |||||||| ||| Sbjct 21608169 CCTATCAGAGTCTTCACGAAAATCTGCATCTTG 21608137 >seq1 Length=161108492 Score = 116 bits (128), Expect = 9e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 104385 AGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGAT 104444 ||||||| | ||| | || ||||| ||||| || |||||||| || || || || || | Sbjct 47266948 AGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGT 47267007 Query 104445 CAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAG 104504 ||||||| |||||||| |||||||| ||||| || |||||||||||| ||||| | Sbjct 47267008 CAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGG 47267067 Query 104505 GTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 | || |||| | || || ||||| | || || || || | || |||||||| ||| Sbjct 47267068 GCTCCACCTTGACAGTGATGGTCTTCACTGTCAGRGTCTTCATGAAAATCTGCATCTTG 47267126 >seq14 Length=81409030 Score = 113 bits (124), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || || ||| | || || ||||||||||||||||| || ||||| ||||| |||||||| Sbjct 60398582 GGGGAGAGGGTGGTGGCCTTTGCCGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCT 60398641 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| || ||| | ||||||||||| || ||||| ||| | ||||| || || || | Sbjct 60398642 GCTATATTCTGGCTAAAGAAAAGAGGACTCATGCCTGGACTCACTTTTTCCAATGAGCTC 60398701 Query 269246 ATAAGCAGGGACGAAG 269261 || ||| | || |||| Sbjct 60398702 ATCAGCMGAGATGAAG 60398717 >seq9 Length=108100205 Score = 104 bits (114), Expect = 5e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | ||| ||||||||||| || || | || || | || || ||||| | Sbjct 19605295 TGGTGGTACTTTATATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 19605236 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 |||||| || ||| | |||||| || || |||||||| | ||| |||||||| ||| Sbjct 19605235 AAGAAAAACAACCAAGTCTCTTTTCTTCACGTGTATCATCACTGTACCATGTTTACGTTG 19605176 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 | ||||| || ||||| ||| | ||||||||||| Sbjct 19605175 TGGTGGATTGGAATTAAGTGGGTTGCAGGAGGACA 19605141 >seq13 Length=84433108 Score = 87.8 bits (96), Expect = 4e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 65771 AAACTCCTCCTTACCGAAATTAAATATTAATATTCCAACATTACCTCTATAGTCTGAATC 65830 ||||| ||| || || |||||||| | | | |||||||| |||||||| ||| ||| Sbjct 33720262 AAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTCCCTCTATAATCTTCATC 33720203 Query 65831 TATAACACCAGCACCTACATCTATAAAGTAATTATAC-GCTAATCCAGATCGGGGAGCTA 65889 ||| |||||||| ||||||||||| ||| || | | || || ||||| || ||||| | Sbjct 33720202 TATGACACCAGCTCCTACATCTATGAAG-GGTTCTGCTGCCAAGCCAGAACGAGGAGCCA 33720144 Query 65890 TTCTACCATA 65899 ||| ||||| Sbjct 33720143 CTCTTCCATA 33720134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397927926656