Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq16 120 3e-22 >seq16 Length=77906047 Score = 120 bits (132), Expect = 3e-22 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 127171 GGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATGCCACAGGCA 127230 || |||||||| |||| || ||||| ||||| ||||| |||||||| |||||| |||| Sbjct 3570867 GGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAAGAGGTGATGCCAMAGGCT 3570808 Query 127231 GAAAATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAGCTGAAGACA 127290 || || ||||| || ||||| || || ||||| || || ||||| || ||||||||||| Sbjct 3570807 GAGAACCACGGGCCTGACATCAAGGAGCACGTGAACTCACTGGGGGAGAAGCTGAAGACC 3570748 Query 127291 TTGAGACTTCGACTGCGTCGCTG 127313 | | || || ||||| ||||| Sbjct 3570747 CTCCGGCTGCGGCTGCGGCGCTG 3570725 Score = 87.8 bits (96), Expect = 2e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 127315 CACCGCTTTCTCCCGTGCGAGAACAAGAGCAAGGCGGTGGAAAAGGTGAAGAGAGTGTTC 127374 || |||||||| || ||||| |||||||||||||||||||| |||||||||||||| ||| Sbjct 3569709 CATCGCTTTCTGCCCTGCGAAAACAAGAGCAAGGCGGTGGAGAAGGTGAAGAGAGTCTTC 3569650 Query 127375 AGCGAG 127380 || ||| Sbjct 3569649 AGTGAG 3569644 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 127379 AGCTTCAGGAAAGAGGCGTGTACAAGGCCATGAGTGAGTTTGACATATTCATCAACTACA 127438 |||| || || || || || ||||| |||||||||||||||||||| ||||||||||||| Sbjct 3568569 AGCTCCAAGAGAGGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 3568510 Query 127439 TCGAGACTTACATG 127452 | || || |||||| Sbjct 3568509 TAGAAACCTACATG 3568496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430054232278784