Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq16 165 1e-35 >seq16 Length=77906047 Score = 165 bits (182), Expect = 1e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| || || || | |||||||||||| ||| |||| || ||||| |||||| Sbjct 65515420 GTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTAAGCACATCACACACT 65515479 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||||||||||| ||||| || || || |||||||| |||||||||||||| ||||| Sbjct 65515480 CTGTTGTGTTCCCGTAGCCAAATGGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 65515539 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 | || || || ||||| | || | ||| || || | || || |||||||| | Sbjct 65515540 ACTTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAACATGAGGCGGGTAGATCATTTCG 65515599 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| ||||||||| | ||| |||||||| || || | ||| |||| Sbjct 65515600 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATTAATCATCT 65515648 Score = 161 bits (178), Expect = 1e-34 Identities = 220/305 (72%), Gaps = 2/305 (1%) Strand=Plus/Plus Query 8673 GAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAG 8732 |||| | ||| | || || ||||| ||||| ||||| || |||| |||||||| || | Sbjct 65513735 GAACACTGAATGAGGTAAAGGGACAGCCTTTCACGTTACTGCAGATGAGAGACTGAATTG 65513794 Query 8733 TTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAAC 8792 ||| | |||| ||| ||| || || ||||| ||||| ||||| || |||||||| Sbjct 65513795 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCGAAAGTGCTAGGCTTCCAGTACT 65513854 Query 8793 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCT-CG 8851 | || ||||| || || |||| || ||||| ||||| || || || || |||| | Sbjct 65513855 CGGGAGAGCATATAGGATTACCCATAAGTCCTTTCAGGGAGAATGGTGCTCC-AGCTTCT 65513913 Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911 | ||| |||| || |||||||| | ||||||||||| || |||| | ||| || Sbjct 65513914 ACCATGGTCTCCCCAAAGATGGCRTCTGGACGGGGCTTCTCTACCAGAAGGGCGGGATAA 65513973 Query 8912 AACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCT 8971 ||||||| || || |||||||| || || || | || ||||| |||||||| ||| Sbjct 65513974 AACTCCATGGCATCTATGTCTCCATAGAGCGCTTCTAACTCTGCAGCCATTTCCTTCTCT 65514033 Query 8972 CCTGT 8976 ||||| Sbjct 65514034 CCTGT 65514038 Score = 107 bits (118), Expect = 3e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 ||| |||||||| | ||| |||||||| || || ||||| | ||||| ||| | || Sbjct 65516435 TCTCACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 65516494 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 ||| || || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 65516495 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCAGATTTGTGCCCTGGGGATC 65516554 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186 ||| |||| | || | ||||| ||||| |||||| Sbjct 65516555 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAAC 65516593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708524516590080