Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq5 120 3e-22 seq11 82.4 8e-11 >seq5 Length=125642736 Score = 120 bits (132), Expect = 3e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 130656 TCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCA 130715 || || || ||||||| | | ||||| ||||||| ||||||||| |||| | | Sbjct 107358631 TCCTCCTCAGTTTCAAACTGAGCAAGAACAGCTCCCACTGAAGTACAGGATGTCTGACTG 107358572 Query 130716 AATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCAT 130775 ||||||||||| ||||| ||||||||||| ||||| || ||| ||||||||||||||| Sbjct 107358571 AATGTCCAATTCTTTGAGTCTTCAGAAAAATAAAAACAYTTACTCCCAAATCCAATCCAT 107358512 Query 130776 CCCTTTGGGCAAGTAACATA 130795 || |||||||| | ||||| Sbjct 107358511 CCTTTTGGGCAGCTGACATA 107358492 Score = 120 bits (132), Expect = 3e-22 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || || || ||||||| | | ||||| ||||||| ||||||||| || | | Sbjct 107954586 AGCTCCTCCTCMGTTTCAAACTGAGCAAGAACAGCTCCCACTGAAGTACAGGATATCTGA 107954645 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||||| | ||| ||||||||||| ||||| || |||| |||||||||||| Sbjct 107954646 CTCAATGTCCAATTCTCTGAGTCTTCAGAAAAATAAAAACACTTATTCCCAAATCCAATC 107954705 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||||| |||||||| || ||||| Sbjct 107954706 CATCCTTTTGGGCAGGTGACATA 107954728 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || || || ||||||| | | ||||| ||| ||| ||||||||| || | | Sbjct 107415977 AGCTCCTCCTCAGTTTCAAACTGAGCAAGAACAGCTTCCAGTGAAGTACAGGATATCTGA 107415918 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||||| | ||| ||||||||||| ||||| || |||| |||||||||||| Sbjct 107415917 CTCAATGTCCAATTCTCTGACTCTTCAGAAAAATAAAAACACTTATTCCCAAATCCAATC 107415858 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||||| |||||||| || || || Sbjct 107415857 CATCCTTTTGGGCAGGTGACGTA 107415835 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || || || ||||||| | | ||||| ||| ||| ||||||||| || | | Sbjct 107477113 AGCTCCTCCTCAGTTTCAAACTGAGCAAGAACAGCTTCCAGTGAAGTACAGGATATCTGA 107477054 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||||| | ||| ||||||||||| ||||| || |||| |||||||||||| Sbjct 107477053 CTCAATGTCCAATTCTCTGACTCTTCAGAAAAATAAAAACACTTATTCCCAAATCCAATC 107476994 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||||| |||||||| || || || Sbjct 107476993 CATCCTTTTGGGCAGGTGACGTA 107476971 Score = 102 bits (112), Expect = 9e-17 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 130665 GTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCAAATGTCCAA 130724 ||||||| | | |||| ||| ||||||||||||| ||||| | | |||||||| Sbjct 107327146 GTTTCAAACTGAGCAAGGACAGCTTCCAATGAAGTACAGAATGTCTGACTGAATGTCCAG 107327087 Query 130725 TTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCATCCCTTTGGG 130784 || ||| ||||| ||||| ||||| |||||| ||||||||| |||||||| |||| | Sbjct 107327086 TTCCTTGTGTCTTCCGAAAAATAAAAACATTTACTTCCAAATCCTATCCATCCTTTTGAG 107327027 Query 130785 CAAGTAACATA 130795 || | |||||| Sbjct 107327026 CAGGGAACATA 107327016 >seq11 Length=110256634 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 21168 TTGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTC 21227 ||||||| | |||||| | ||||| || | ||||| || || || || || ||||| | Sbjct 90331003 TTGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCC 90331062 Query 21228 CTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267 | |||| ||| ||| ||||||||| |||||||||||||| Sbjct 90331063 CCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTC 90331102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531900587239680