Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq17 87.8 2e-12 >seq17 Length=76519027 Score = 87.8 bits (96), Expect = 2e-12 Identities = 170/249 (68%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 26750 TACTTTTTAGT--CAA-ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGAT 26806 |||||||| || ||| | | |||||| | ||||| || || | ||||| ||| | || Sbjct 53718871 TACTTTTTTGTTCCAACAGACAATGCAGATCTTTGTGAAGACCCTCACTGGTAAAACCAT 53718930 Query 26807 CACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAA 26866 ||| | || | || | | |||||||||||| | ||||| ||||| || || Sbjct 53718931 CACTCTGGAGGTGGAGCCCAGTGACACCATCGAGAAYGTCAAGGGGAAGATACAAGAAAA 53718990 Query 26867 AGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGA 26926 |||||| || || || || || || || || || | | ||| ||||| || ||||||| Sbjct 53718991 AGAAGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGG 53719050 Query 26927 TAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 | | | | ||||| ||||| || || || || ||| | || |||||||| | || Sbjct 53719051 CCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCT 53719110 Query 26987 TAGAGGAGG 26995 ||||| || Sbjct 53719111 CAGAGGTGG 53719119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478662208535040