Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq17 87.8 2e-12 seq19 84.2 2e-11 >seq17 Length=76519027 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/179 (72%), Gaps = 3/179 (2%) Strand=Plus/Plus Query 23972 TACTTTTTAG--CCAA-ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGAT 24028 |||||||| | |||| | | |||||| | ||||| || || | ||||| ||| | || Sbjct 53718871 TACTTTTTTGTTCCAACAGACAATGCAGATCTTTGTGAAGACCCTCACTGGTAAAACCAT 53718930 Query 24029 TACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAA 24088 || | || || ||| ||| |||||||||||| | ||||| ||||| || || Sbjct 53718931 CACTCTGGAGGTGGAGCCCAGTGACACCATCGAGAAYGTCAAGGGGAAGATACAAGAAAA 53718990 Query 24089 AGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||||||| || || || || ||||| ||||| | | ||| || || || ||||||| Sbjct 53718991 AGAAGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATG 53719049 >seq19 Length=65317831 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | || || ||||| | || || || | || ||| | || || ||| | Sbjct 34141409 CAAAATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCC 34141350 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || |||||||||||| | || || ||||| || || |||||||| || || || Sbjct 34141349 CAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGA 34141290 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||||| || || | | ||||||||| || ||||||| | | | | ||||| Sbjct 34141289 CCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTA 34141230 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || ||||| || || Sbjct 34141229 CAACATCCAGAAAGAGTCGAC 34141209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935832324960