Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq14 89.7 1e-12 seq11 87.8 3e-12 >seq14 Length=81409030 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || |||||| |||| |||||| |||| || || || || ||||||||||| | || || Sbjct 60398582 GGGGAGAGGGTGGTGGCCTTTGCCGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCT 60398641 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | || |||||||| ||| | | ||| || ||||| |||||||| || || || || || Sbjct 60398642 GCTATATTCTGGCTAAAGAAAAGAGGACTC-ATGCCTGGACTCACTTTTTCCAATGAGCT 60398700 Query 42815 CATCAGCAGGGACGA 42829 ||||||| | || || Sbjct 60398701 CATCAGCMGAGATGA 60398715 >seq11 Length=110256634 Score = 87.8 bits (96), Expect = 3e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 ||||||||||| | || || || ||||||||||| || || | || || || || |||| Sbjct 90332928 TGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCGATATTCT 90332869 Query 42766 GGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||||||| | ||| | |||||| || ||||| || || || ||||| || ||||| Sbjct 90332868 GGCTCAAGAAACGAGGACT-GATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGA 90332810 Query 42825 GACGAGG 42831 ||||||| Sbjct 90332809 GACGAGG 90332803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338822264320