Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq8 93.3 4e-14 seq17 89.7 5e-13 >seq8 Length=116941312 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| |||| ||| | | ||||||||||| ||||||||||| || ||||| || Sbjct 110779564 CAACACTAGATGAAGAGTAGACTCCTTTTGCATGTTGTAGTCAGACAAAGTACATCCATC 110779505 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || ||||| || || | | |||| || | || ||||| ||||| || ||||| || || Sbjct 110779504 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 110779445 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || |||| | ||| || || || | | ||| ||||||| || | || Sbjct 110779444 CTGGATCTTGGCYTTTACATTTTCTACTGTATCCGAGGGCTCAACCTCGAGAGTGATGGT 110779385 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || ||||| || || || ||||||||||| Sbjct 110779384 CTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 110779352 >seq17 Length=76519027 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || || || || || ||||| |||| | Sbjct 53719086 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGTTTCCCGGCA 53719027 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || || |||||||| || || || || | Sbjct 53719026 AAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCTTGTATCTTCCCCTTGACR 53718967 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||||||||| | || | ||||||||||| || || || Sbjct 53718966 TTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTC 53718907 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 53718906 ACAAAGATCTGCAT 53718893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262201495040