Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq16 158 2e-33 seq11 114 2e-20 >seq16 Length=77906047 Score = 158 bits (174), Expect = 2e-33 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785 |||||| | | || || ||||||||||| || |||||||| || || || ||||| || Sbjct 65515407 GATTAGCCTGCTTGTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTAAG 65515466 Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845 ||||| || || ||||||||||| | ||||| |||||||| |||||||| | ||| || Sbjct 65515467 CACATCACACACTCTGTTGTGTTCCCGTAGCCAAATGGTGGCATACATCATCAGACCAGG 65515526 Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGC 9905 ||| | |||||| ||||| | ||||| ||||| || | || || || | |||| Sbjct 65515527 CACCAGACCAAAGACTTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAACATGAGGCGG 65515586 Query 9906 ATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 || | ||| | ||||| || |||||||| ||||| |||||||| || || | ||| Sbjct 65515587 GTAGATCATTTCGACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATTAAT 65515643 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 ||| |||||||| | ||| | |||||||| |||||||| | | ||| ||| | || Sbjct 65516435 TCTCACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 65516494 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 |||||| || || ||||| || | || || || |||||||| || |||||||||||||| Sbjct 65516495 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCAGATTTGTGCCCTGGGGATC 65516554 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 || || || | || | | || ||||| | ||||| | | ||||||| || || Sbjct 65516555 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAACTTCTTTTGAATCAGGAAG 65516611 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | || || ||||||||| ||| || ||||| |||| ||| ||| Sbjct 65517267 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGGCACAGGAGGAAGAGCTCTGGTA 65517326 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 ||||| || || || ||||| ||||||||||| || |||| || | | || || Sbjct 65517327 TAATAAGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCTGTAGTGCACATTATAAGTT 65517386 Query 10507 GGGGGACTGTCAATCA 10522 || ||||| ||||||| Sbjct 65517387 GGTGGACTCTCAATCA 65517402 Score = 89.7 bits (98), Expect = 7e-13 Identities = 127/177 (72%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 9545 GAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTC 9604 |||| | ||||||| || | ||||||| ||||||| || || ||||| || || || | Sbjct 65514942 GAAAGACGTCAGGCAGAAGGGGATGCCAGTGGTAGAGCGTGTTAAACTCAGCAGCAATAC 65515001 Query 9605 GGTTCTGGTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAA 9662 ||||||||||||| || | ||| ||| || | ||| |||||||| | || | ||| Sbjct 65515002 GGTTCTGGTACTGGAACTGTTGGT--TGAAAAGCAGCTCTGGGTCAAACTTCAGTTTGAA 65515059 Query 9663 GTGGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 ||| || || || | ||||| || || | | || | ||| ||||| ||||| || Sbjct 65515060 GTGATAGCCACTCAAGTGCTGTACGTAGTCTTCAATCACAATCTTAATAGTTTCTCC 65515116 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 9963 AACCTGATACTTCATCTTCCCATCCTTGAACAGACGCAGCTTATGCTGCTTCTCCAACGT 10022 ||||||||| ||||| || ||||||||||| || |||||||||||||| |||| || | Sbjct 65515755 AACCTGATATTTCATTTTTCCATCCTTGAAAAGGCGCAGCTTATGCTGTCTCTCTAAAGA 65515814 Query 10023 TTCGCCGTAGATGTGACTGAGATCGACCT 10051 ||| || || |||||||| | || |||| Sbjct 65515815 TTCACCATAAATGTGACTTAAGTCCACCT 65515843 >seq11 Length=110256634 Score = 114 bits (126), Expect = 2e-20 Identities = 175/248 (71%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || || | || || || || || || || || ||||| | ||||||||| Sbjct 96423588 GTGGCCGTCTTGACAAGGTTGAAGCCCACRTCACCACCAAATGTGCTTGCCTTCCAGTAC 96423647 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | || || |||||| |||| | | ||| || || | |||||| |||||||||| || Sbjct 96423648 TCTGGAGAACAGATGGGGTTCCCTAAGAGGCCCTTAAGGGAAAAAGGAGCCCCCATTTCT 96423707 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGTA 9111 || || ||||| || ||||||| ||| | || || | || | |||| | ||| Sbjct 96423708 ATCATACTCTCCCCAAAGATGGAGTTCGGATGGCACTTCTCAA-GAAGTAGCCCCGGGTA 96423766 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || ||| | ||| | || ||| ||||| || | |||||||| || || ||||||||||| Sbjct 96423767 GAATTCCAAAGCATSGATGTCTCCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTC 96423826 Query 9172 ACCTACAA 9179 ||| ||| Sbjct 96423827 CCCTGCAA 96423834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723727710508800