Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq23 150 7e-31 seq8 116 1e-20 seq3 87.8 7e-12 >seq23 Length=53331160 Score = 150 bits (166), Expect = 7e-31 Identities = 348/524 (66%), Gaps = 3/524 (1%) Strand=Plus/Plus Query 451082 AATGCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGAT 451141 ||| || | ||||| || | |||||| |||||| | || ||| | | | | ||||| | Sbjct 27283540 AATCCCCAGAACACTGTCTTTGATGCCAAACGTCTGATAGGCAGAAAATTTAATGATCCT 27283599 Query 451142 ACTGTACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCC 451201 || ||| ||| | ||| | | ||| | ||| | ||| || ||| |||||| Sbjct 27283600 GTCGTGCAATCAGATATGAAACTTTGGCCTTTCCAAGTAATCAATGAAGGAGGCAAGCCC 27283659 Query 451202 TATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCT 451261 | | || || ||||| |||| ||| ||||| |||||||||||| || ||| Sbjct 27283660 AAGGTAATGGTGTCCTACAAAGGGGAAAAGAAAGCTTTTTATCCTGAAGAAATCTCTTCT 27283719 Query 451262 ATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGAT 451321 ||||| || ||||| ||||| || || || || | | | || | | || || || Sbjct 27283720 ATGGTACTAACTAAGATGAAGGAGACTGCTGAGGCTTTTTTGGGCTACACTGTCACCAAT 27283779 Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || || ||||| || || || |||||||| | ||||| || || || || ||||| Sbjct 27283780 GCTGTGATCACTGTGCCAGCCTACTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCG 27283839 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || ||| || ||| | ||||| || ||||||| |||||||| || || ||||| | Sbjct 27283840 GGTGTTATCGCAGGTCTCAATGTGCTAAGAATTATCAATGAACCCACTGCTGCTGCCATT 27283899 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTT 451501 || ||||| ||| ||| | || | ||| | || | || | |||||| | Sbjct 27283900 GCCTATGGCTTAGATAAAGC---AGGTCAGGGAGAGCGACATGTCTTGATCTTTGATCTG 27283956 Query 451502 GGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAG 451561 |||||||| || |||| || || || | || || |||||| | ||||| || ||| Sbjct 27283957 GGTGGAGGCACATTTGATGTGTCCGTCCTGACCATAGATGATGGGATTTTTGAGGTTAAG 27284016 Query 451562 GCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || ||| || || || | || || || ||| |||| || Sbjct 27284017 GCCACAGCTGGGGACACCCACTTGGGTGGAGAGGATTTTGACAA 27284060 >seq8 Length=116941312 Score = 116 bits (128), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || ||||| || || || || ||||| || ||||| | || Sbjct 110779352 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTTGAGCCCTCG 110779411 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| | ||| | | || || || || ||||||||||||||||||||||| || Sbjct 110779412 GATACAGTAGAAAATGTAAARGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 110779471 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || ||||| ||||||||| | |||||| | || || || Sbjct 110779472 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAAC 110779531 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 || | ||||| | || ||||| |||| || ||||| Sbjct 110779532 ATGCAAAAGGAGTCTACTCTTCATCTAGTGTTGAGACT 110779569 >seq3 Length=127865068 Score = 87.8 bits (96), Expect = 7e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || |||| || || | || ||||| || || || | || Sbjct 21608141 ATGCAGATTTTCGTGAAGACTCTGATAGGGAACATCATCACTCTCGAGGTCGAGCCCTCA 21608200 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || || || |||||||| ||||||||||||| || Sbjct 21608201 GATACAATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAAGAATTCCTCCTGACCAG 21608260 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || ||||| |||||||| |||||| | || || || Sbjct 21608261 CAAAGACTGATCTTTGCTGGCAAGCAACTCAAAGATGGACATACTTTGTCTGACTACAAC 21608320 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| |||| | ||||| Sbjct 21608321 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTGGAGACT 21608358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975717589955456