Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq23 188 5e-42 seq15 140 2e-27 seq6 136 3e-26 seq19 105 5e-17 >seq23 Length=53331160 Score = 188 bits (208), Expect = 5e-42 Identities = 916/1434 (64%), Gaps = 26/1434 (2%) Strand=Plus/Minus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 || || ||||| ||||||||||||||||| | ||||| || || ||||| ||||| || Sbjct 27284825 GCTGTGACATTGAGAATACCATTGGCATCGATGTCAAAGGTCACCTCAATCTGAGGCACT 27284766 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || || | ||||| ||||| || || || ||| ||||| || || || | Sbjct 27284765 CCCCTGGGTGCAGGAGGGATTCCAGTCAGATCAAAGCGCCCCAGCAGGTTGTTGTCCCGA 27284706 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 || | | || ||||| | | ||||| || | | ||||| |||||||| Sbjct 27284705 GTCATGGCCCTCTCGCCCTCATACACCTGGATCAGCACGCCCGGCTGATTGTCTGAATAG 27284646 Query 517439 GTTGTAAATACTCTGGATTTTTTACAAGGA-ATTGTTGTGTTTCTATCAAT-AATATTGG 517496 || || || | |||| | | | | || || || | ||| | | || |||| | Sbjct 27284645 GTGGTGAAAA-TCTGTGTCTGCTTCGTGGGGATGGTGGAGTTGCGCTTGATTAATACAG- 27284588 Query 517497 TCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAA 517556 |||| | || ||||| || || || || | ||| || |||| || || | | | | Sbjct 27284587 TCATGACTCCCCCTGCAGTCTCCAACCCTAAAGACAGGGGAGCCACGTCCAACAAAAGCA 27284528 Query 517557 TATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCAT 517616 | || | |||||| | | || | | ||| ||||| |||| ||||| |||| Sbjct 27284527 GGTCCTGTACCTTTTCAGACTTATCCCCCATCAAAATGGCTGCCTGAACTGCAGCCCCAT 27284468 Query 517617 ATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-T 517675 | ||||| || ||||| || || | | | || || | |||||| || | | | Sbjct 27284467 AGGCAACTGCCTCATCGGGGTTGATGCTCTTGTTGAGATCACGACCATTAAAGTAGTCCT 27284408 Query 517676 GAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 517735 | || | | | |||||||| || || | || || || ||||| ||||| ||||| Sbjct 27284407 GCAACAGCCTCTGA-ACCTTAGGGATTCGCGTAGAGCCCCCTACTAAGACAATGTCATGG 27284349 Query 517736 ACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCT 517795 | | | |||||||| || | |||| | | | || || || || || || | Sbjct 27284348 ATTTTAGCTTTATCCATCTTGGCATCCCGAAGAGCCTTCTCCACAGGCTCCAGGGTGCCC 27284289 Query 517796 CTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-T 517853 ||||||| ||||| ||| | ||||| || ||||| || || || | || || | Sbjct 27284288 CTAAACAGGTCTGCACACAACTCTTCAAACCGGGCTCTGGT--GATGGATGTGTAGAAGT 27284231 Query 517854 CAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCAC 517913 |||| ||||| | | || |||| ||| | | | || || ||| || || | | Sbjct 27284230 CAATGCCTTCATAAAGTGAGTCAATTTCCAAGTTGGCCTGGGTGCTAGATGACAGGGTCC 27284171 Query 517914 GTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATTGATTC 517969 || || | ||| || || || | | | | | || |||| | ||| |||| Sbjct 27284170 TCTTGGCCCTTTCGCAGGCAGTGCGCAACCGCCTCACAGCCCGCTTGTTCTGGCTGATG- 27284112 Query 517970 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 518029 || | |||| ||| |||||||| ||||| ||| | | ||||| | || ||| Sbjct 27284111 ---TCCTTCTTATGTTTCCTCTTGAATTCTTCCACAAAGTGGCTCACAAGCCTGTTGTCA 27284055 Query 518030 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 518089 ||||| || || ||||| | || | || | || || | || | |||| ||||| Sbjct 27284054 AAATCCTCTCCACCCAAGTGGGTGTCCCCAGCTGTGGCCTTAACCTCAAAAATCCCATCA 27283995 Query 518090 TCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-T 518148 || | | || | | |||||| || || ||||||| |||||| || | |||| | Sbjct 27283994 TCTATGGTCAGGACGGACACATCAAATGTGCCTCCACCCAGATCAAAGATCAAGACATGT 27283935 Query 518149 CATT-TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCAT 518207 | | || || | || ||| | | ||| ||||| |||| ||||||||||| ||||||| Sbjct 27283934 CGCTCTCCCTGACCTGCTTTATCT-AAG-CCATAGGCAATGGCAGCAGCAGTGGGTTCAT 27283877 Query 518208 TAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTT 518267 | |||||||| | ||||| ||||| || || || ||||| || ||||| || | || Sbjct 27283876 TGATAATTCTTAGCACATTGAGACCTGCGATAACACCCGCATCCTTGGTGGCCTGGCGTT 27283817 Query 518268 GTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATAT 518327 | || || || || || || || ||||| || || |||| || || | || | | Sbjct 27283816 GAGAGTCATTGAAGTAGGCTGGCACAGTGATCACAGCATTGGTGACAGTGTAGCCCAAAA 27283757 Query 518328 AAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAAT 518387 |||| || || | ||||| ||| ||| | ||| || || |||| ||| || || Sbjct 27283756 AAGCCTCAGCAGTCTCCTTCATCTTAGTTAGTACCATAGAAGAGATTTCTTCAGGATAA- 27283698 Query 518388 ATTGCTTGGATT--CATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAAT 518445 | |||| || | |||| || || || | | || || || |||| || Sbjct 27283697 AAAGCTTTCTTTTCCCCTTTG-TAGGACACCATTACCTTGGGCTTGCCTCCTTCATTGAT 27283639 Query 518446 AACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACC 518505 |||| || ||||| ||||||||||||||| || | |||||||| | ||| || Sbjct 27283638 TACTTGGAAAGGCCAAAGTTTCATATCTGATTGCACGACAGGATCATTAAATTTTCTGCC 27283579 Query 518506 AATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGC 518565 || | ||||| |||||||| | ||| || ||||| || || | || | ||||| Sbjct 27283578 TATCAGACGTTTGGCATCAAAGACAGTGTTCTGGGGATTCATGGCTACCTGGTTCTTGGC 27283519 Query 518566 TGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATT 518625 |||||| || || || | || || || || || | || || || || ||||| || Sbjct 27283518 TGCATCGCCGATGAGCCGCTCAGTATCAGTGAAGGCCACGTAGCTGGGGGTGGTGCGGTT 27283459 Query 518626 ACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 518679 || || || || || || || || || || || | ||| | || || ||||| Sbjct 27283458 GCCCTGGTCGTTGGCGATGATCTCCACCTTGCCGTGTTGGAACACCCCCACACA 27283405 >seq15 Length=84800079 Score = 140 bits (154), Expect = 2e-27 Identities = 371/559 (66%), Gaps = 10/559 (2%) Strand=Plus/Plus Query 517602 GAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTAC 517661 || || | ||||||||||||||||| |||||||| || | | | ||| |||| ||| | Sbjct 32467440 GATTACCTGCACCATATGCAACAGCCTCATCAGGGTTGATGCTCTTATTCAGTTCTTTCC 32467499 Query 517662 CATTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACT 517720 | ||||| || | ||||||| ||| | ||| || ||||| | ||| || ||||| Sbjct 32467500 CGTTGAAGAAGTCCTGGAGAAGTT-TCTGAATCTTGGGGATACGGGTTGAGCCACCAACC 32467558 Query 517721 AATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACG 517780 || ||||| ||||| | ||| || || |||||||| | |||| | |||| || || Sbjct 32467559 AAGACAATATCATGAATCTGAGACTTGTCCAGTTTGGCATCCCTAAGGGCTTTCTCCACA 32467618 Query 517781 GGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGA 517840 || || || | | |||||||| | | | |||||| ||| || | |||| | Sbjct 32467619 GGGTCCAGGGTGCCACGGAACAAGTCAGCATTCAATTCTTCAAATCGGGCACGGGTAATA 32467678 Query 517841 GTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAA 517900 | | || | || |||||||| | | ||||||| ||||| | | || || Sbjct 32467679 GAGGTATAGAAGTCGATTCCTTCATAGAGGGAATCAATCTCAATACTGGCCTGGGTGCTG 32467738 Query 517901 GAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG-GCTTTTG 517958 ||||| || | || |||||||| ||||| || || | || | || | || || ||| Sbjct 32467739 GAAGAGAGAGTGCGCTTAGCACGCTCACAAGCAGTACGGAGGCGACGGACAGCCCTCTTG 32467798 Query 517959 CTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTAC 518016 | || | | | ||| | || | ||| | |||||| || ||| | | ||| | || Sbjct 32467799 TT--TTCACTGATATCCTTCTTGTGTTTACGCTTGAACTCCGCAATAAA--ATGGTTAAC 32467854 Query 518017 AAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTG 518076 | || || ||||| ||||| || ||||| | ||||| ||| | |||| | | || | Sbjct 32467855 CATGCGGTTGTCAAAGTCTTCTCCACCCAAGTGAGTATCTCCAGCTGTAGATTTGACCTC 32467914 Query 518077 GAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAA 518136 || | |||||| |||| || | | | |||||| || ||||| || | |||||| Sbjct 32467915 AAAGATTCCATCCTCAATAGTGAGGATTGACACATCAAAAGTGCCACCMCCTAAATCAAA 32467974 Query 518137 AATAAGTACATTCATTTCT 518155 || || || || ||||| Sbjct 32467975 GATCAGCACGTTTCTTTCT 32467993 Score = 102 bits (112), Expect = 6e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||||| |||| ||||||||||||||| ||||| || |||| | || Sbjct 32468086 TTTTTGTCTAAGCCATAGGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCGAAGTACG 32468145 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| |||| |||||||| || || || | || || || |||||||| Sbjct 32468146 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTAAAATAG 32468205 Query 518285 GCAGGAACAGT 518295 ||||| || || Sbjct 32468206 GCAGGTACTGT 32468216 >seq6 Length=122646612 Score = 136 bits (150), Expect = 3e-26 Identities = 354/537 (66%), Gaps = 4/537 (1%) Strand=Plus/Minus Query 518120 CCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCA 518179 |||||||| | |||||| || || ||||| | ||| | ||||| || | ||| Sbjct 89911079 CCACCACCTAAATCAAAGATCAGCACATTTCTCTCTGCTCCAACMTTTTTGTCTAAGCCA 89911020 Query 518180 TACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATT 518239 || |||| ||||||||||||||||||| | || ||||| | ||| ||||||||||| Sbjct 89911019 TAGGCAATAGCAGCAGCAGTTGGTTCACTGATGATTCTAAGTACACGGAGACCAGCAATA 89910960 Query 518240 CTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATA 518299 ||| |||||||| || || || | || || || ||||| || ||||| || || | | Sbjct 89910959 GTTCTAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTAAAGTAGGCAGGTACTGTGACA 89910900 Query 518300 ACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAA 518359 || | | || || || |||| | | ||| ||| |||| | || | | Sbjct 89910899 ACAGYRTTGGTAACAGTCTTCCCAAGGCAGACTTCTGCAATTTCTTTCCTCTT-TTCAGG 89910841 Query 518360 ATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCA 518419 | ||| ||||| || | ||||| || | ||| | || | ||| ||||| | Sbjct 89910840 ACCATGGATGACATCTCCTCTGGATAAAAACTCTTTGTCTCTCCYTTGTATTCTACTTAA 89910781 Query 518420 AAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGA 518479 | | ||| | | || |||| || | || ||||| | ||||||| | || || Sbjct 89910780 ACCTTAGGTCTGCCAGCATCATTTGCCACCATGAAGGGCCAATGTTTCATAACAGACTGG 89910721 Query 518480 ACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTT 518539 ||| |||| ||| || ||| | | | |||| |||||||||| || ||||| Sbjct 89910720 ACAACAGCATCATCAAATCTTCATCCAGTAAGTTGTTTGGCATCAAAAACCGTGTTGGTG 89910661 Query 518540 GGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCT-GTCTCTGTAAA 518598 ||||| |||| |||| | || || ||||| ||||||| || ||| || | ||||| Sbjct 89910660 GGATTCATTGYGACTTGGTTCTTTGCAGCATCACCAATCA-ATCGTCTGGTGTTAGTAAA 89910602 Query 518599 TGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTT 518655 ||||| ||| || || | | | || |||||||| ||||| ||||| || || Sbjct 89910601 GATGACATAGCTTGGGGTGGTTC-AGTCCCCTGATCATTGGCAATTATTTCCACCTT 89910546 >seq19 Length=65317831 Score = 105 bits (116), Expect = 5e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| || || ||||||||||||| ||||||||||| || ||| | || || ||| | Sbjct 41910187 TGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGYCTTGGT 41910128 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 || |||| ||||| | ||||| |||||||| |||||||||||| | | |||||| | Sbjct 41910127 GTGGTTGGGAGAGACAAGTATGGGGTTTTCCCTCTTAGAGGAAAAATCCTCAATGTTCGA 41910068 Query 635561 GATGCTAGTCCTAAA 635575 || ||| || |||| Sbjct 41910067 GAAGCTTCTCATAAA 41910053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780820812054592