Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq7 91.5 2e-13 seq11 86.0 7e-12 >seq7 Length=111948857 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 |||||||||||||||| || | ||||| || ||||| ||||| ||| |||| | Sbjct 9118156 GCATCAATCTCATCAACAAACAAGATACAGGGAGCATTTTTCCGGGCCATTGCAAACATG 9118097 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491 || |||||| | ||| ||||||||||||||||||| || | | | ||| Sbjct 9118096 TCATGAACCCAAGCTGGGCCAACACCAACAAACATCTCCAGGAACTCAG-ACCCATTCAT 9118038 Query 9492 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 | ||||||||| ||| || || || || || || |||||| ||||| || || Sbjct 9118037 GGTGATGAAGGGCACACCAGCCTCCCCTAYGATTGCCTTGGGGAGAAGCGTCTTGCCAGT 9117978 Query 9551 ACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCA 9596 ||| || ||| | ||| ||||| ||| |||||| ||||| ||| Sbjct 9117977 ACCAGGAGGACCTGTGAGCAGGGCTCCCTTTGGAATTTTGGCCCCA 9117932 >seq11 Length=110256634 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 116985 ATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 117044 ||| || || |||| ||||||||||||||| |||||||| || || ||| |||||||| Sbjct 90331025 ATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCAT 90331084 Query 117045 AAAGTCAAATGGATT 117059 ||||||||||||||| Sbjct 90331085 AAAGTCAAATGGATT 90331099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980564007680